Detailed information NTG0719821

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: NWF24_RS03780
• Genome accession: NZ_CP102931
• Coordinates: 803834..805063 (-)
• Length: 409 a.a.
• NCBI ID: WP_258353051.1
• Uniprot ID: -
• Organism: Variovorax paradoxus strain JBCE486
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 798834..810063

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NWF24_RS03760 (NWF24_03760)	rpoH	799496..800437 (-)	942	WP_093059932.1	RNA polymerase sigma factor RpoH	-
NWF24_RS03765 (NWF24_03765)	-	800536..801000 (-)	465	WP_258353049.1	DUF962 domain-containing protein	-
NWF24_RS03770 (NWF24_03770)	-	801186..801896 (+)	711	WP_258353050.1	response regulator transcription factor	-
NWF24_RS03775 (NWF24_03775)	-	801899..803701 (+)	1803	WP_258355232.1	hybrid sensor histidine kinase/response regulator	-
NWF24_RS03780 (NWF24_03780)	pilA	803834..805063 (-)	1230	WP_258353051.1	signal recognition particle-docking protein FtsY	Machinery gene
NWF24_RS03785 (NWF24_03785)	-	805141..806532 (+)	1392	WP_375338465.1	M16 family metallopeptidase	-
NWF24_RS03790 (NWF24_03790)	-	806550..807926 (+)	1377	WP_258353053.1	pitrilysin family protein	-
NWF24_RS03795 (NWF24_03795)	-	807934..808851 (-)	918	WP_258353054.1	LysR family transcriptional regulator ArgP	-
NWF24_RS03800 (NWF24_03800)	-	808927..809562 (+)	636	WP_258353055.1	LysE/ArgO family amino acid transporter	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 42429.87 Da
• Isoelectric Point: 5.5403

>NTDB_id=719821 NWF24_RS03780 WP_258353051.1 803834..805063(-) (pilA) [Variovorax paradoxus strain JBCE486]
MFSFFKKKPPAETPDTPAPTPPAAPAPAPDAAPARSVFSPSSWFGSKPAAEETPAPAAPPAPAPAPSPAPAPVATPVAAP
APAPAFVPSPVPTPAPAPVPAPAAEIAVATERKGWFDKLKTGLRKTGTGIQAVFVNAQIDDALYEELESALLMADTGVKA
TEYLLDDLRGRVKRQMATDATQVKVLLAEAVADLLKPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHLATEGASV
LLAAADTFRAAAREQLLVWADRNTVEIVSNEGGDPSAVSFDAVNAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVVT
KADATAPHEVLLVIDGNTGQNALAQVKAFDETLGLTGLIVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETFNA
REFAQALLG

Nucleotide

• Length: 1230 bp

>NTDB_id=719821 NWF24_RS03780 WP_258353051.1 803834..805063(-) (pilA) [Variovorax paradoxus strain JBCE486]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAAACCCCCGATACGCCGGCGCCTACCCCGCCAGCCGCACCGGCGCC
CGCCCCCGATGCTGCGCCGGCGCGCTCGGTGTTCTCGCCTTCGAGCTGGTTTGGCTCGAAGCCGGCGGCCGAAGAAACGC
CGGCTCCTGCTGCGCCACCAGCACCAGCACCAGCGCCCTCCCCGGCGCCAGCGCCTGTCGCAACTCCAGTAGCGGCACCC
GCACCAGCCCCCGCATTCGTTCCATCGCCTGTTCCGACCCCAGCTCCCGCGCCGGTTCCTGCACCCGCCGCCGAAATCGC
CGTCGCCACCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTGCGCAAGACCGGCACTGGCATCCAGGCCGTGT
TCGTCAACGCGCAGATCGACGACGCGCTTTACGAAGAACTCGAATCCGCCCTGCTGATGGCCGACACCGGCGTCAAGGCG
ACCGAATACCTGCTCGACGACCTGCGGGGCCGCGTCAAGCGCCAGATGGCCACCGACGCCACGCAGGTCAAGGTCTTGCT
GGCCGAGGCCGTGGCCGACCTGCTCAAGCCGCTCGAGAAGCCGCTGGTCATCGGCCAGTTCACGCCCACCGTCATCATGG
TGGCCGGCGTCAACGGCGCGGGCAAGACCACCTCCATCGGCAAGCTCACCAAGCACCTGGCCACCGAAGGCGCCTCGGTG
CTGCTGGCCGCGGCCGACACCTTCCGCGCCGCGGCTCGCGAGCAGCTGCTGGTCTGGGCCGACCGCAACACGGTCGAGAT
CGTGAGCAACGAGGGCGGCGATCCGTCGGCCGTGAGTTTCGATGCGGTGAACGCCGGCAAGGCCCGCGGCAAGGACGTGG
TGCTGGTCGACACGGCCGGCCGCCTGCCGACGCAGCTGCACCTGATGGACGAGCTGAAGAAGATCAAGCGCGTCGTCACC
AAGGCCGATGCCACGGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGCGCTCGCGCAGGTCAA
GGCTTTCGACGAAACGCTGGGCCTCACCGGCCTGATCGTGACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGTGCG
CCATTGCGCGCGAACGGCCGATTCCGGTCTATTTCATCGGCGTGGGCGAGAAGCTCGAAGACCTCGAGACCTTCAACGCC
CGCGAGTTCGCACAAGCGCTGCTCGGATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (209-409)

• SRP54-type protein, helical bundle domain (SRP54_N) (127-189)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.057	100	0.509