Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NWF24_RS02770 Genome accession   NZ_CP102931
Coordinates   586733..587131 (+) Length   132 a.a.
NCBI ID   WP_021012487.1    Uniprot ID   T1XFY8
Organism   Variovorax paradoxus strain JBCE486     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 581733..592131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWF24_RS02740 (NWF24_02740) - 581744..581980 (+) 237 WP_007838304.1 Fis family transcriptional regulator -
  NWF24_RS02745 (NWF24_02745) purH 581997..583604 (+) 1608 WP_258352884.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  NWF24_RS02750 (NWF24_02750) - 583638..584120 (-) 483 WP_258352885.1 hypothetical protein -
  NWF24_RS02755 (NWF24_02755) hemL 584124..585404 (-) 1281 WP_258352886.1 glutamate-1-semialdehyde 2,1-aminomutase -
  NWF24_RS02760 (NWF24_02760) - 585404..586366 (-) 963 WP_093056633.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NWF24_RS02765 (NWF24_02765) - 586478..586648 (+) 171 WP_007838397.1 rubredoxin -
  NWF24_RS02770 (NWF24_02770) pilG 586733..587131 (+) 399 WP_021012487.1 PleD family two-component system response regulator Regulator
  NWF24_RS02775 (NWF24_02775) - 587131..587496 (+) 366 WP_093056632.1 PleD family two-component system response regulator -
  NWF24_RS02780 (NWF24_02780) - 587516..588049 (+) 534 WP_093056631.1 chemotaxis protein CheW -
  NWF24_RS02785 (NWF24_02785) - 588092..590404 (+) 2313 WP_258352887.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14706.88 Da        Isoelectric Point: 7.3215

>NTDB_id=719820 NWF24_RS02770 WP_021012487.1 586733..587131(+) (pilG) [Variovorax paradoxus strain JBCE486]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=719820 NWF24_RS02770 WP_021012487.1 586733..587131(+) (pilG) [Variovorax paradoxus strain JBCE486]
ATGGGCCCGAATGGATCAGGTTACAAGGTGCTTGTCATCGACGACAGCAATACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGTGGGCACGAGGTTCTTCTTGCGGAGGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCGCATC
TGATTTTCTGCGACATCCTGATGCCGCGGCTCGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCCCATTTTTCC
AACGTTCCGGTCGTCATGCTGTCTTCGAAAGACGGTGTATTCGACAAGGCCCGCGGCCGTATGGTCGGATCGCAAGACTA
CCTGACCAAGCCTTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCATCGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1XFY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538