Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PT299_RS04410 Genome accession   NZ_CP117962
Coordinates   622439..623068 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain JM109     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 617439..628068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT299_RS04395 helD 617681..619735 (-) 2055 WP_001295354.1 DNA helicase IV -
  PT299_RS04400 yccF 619858..620304 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PT299_RS04405 yccS 620314..622476 (+) 2163 WP_000875061.1 YccS family putative transporter -
  PT299_RS04410 sxy/tfoX 622439..623068 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PT299_RS04415 sulA 623287..623796 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PT299_RS04420 ompA 624153..625193 (+) 1041 WP_000750416.1 porin OmpA -
  PT299_RS04425 matP 625269..625721 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PT299_RS04430 ycbZ 625907..627667 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=719804 PT299_RS04410 WP_000839153.1 622439..623068(-) (sxy/tfoX) [Escherichia coli strain JM109]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=719804 PT299_RS04410 WP_000839153.1 622439..623068(-) (sxy/tfoX) [Escherichia coli strain JM109]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1