Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NVB75_RS15785 Genome accession   NZ_CP102929
Coordinates   3471437..3472804 (-) Length   455 a.a.
NCBI ID   WP_003215821.1    Uniprot ID   A0A1R0GH56
Organism   Pseudomonas sp. CBS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3466437..3477804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVB75_RS15765 (NVB75_15765) yjiA 3467392..3468351 (-) 960 WP_258348270.1 GTPase -
  NVB75_RS15770 (NVB75_15770) - 3468499..3468696 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  NVB75_RS15775 (NVB75_15775) - 3468712..3470778 (-) 2067 WP_076014030.1 carbon starvation CstA family protein -
  NVB75_RS15780 (NVB75_15780) - 3470952..3471320 (+) 369 WP_258348272.1 PilZ domain-containing protein -
  NVB75_RS15785 (NVB75_15785) radA 3471437..3472804 (-) 1368 WP_003215821.1 DNA repair protein RadA Machinery gene
  NVB75_RS15790 (NVB75_15790) - 3472840..3473379 (-) 540 WP_258348275.1 ankyrin repeat domain-containing protein -
  NVB75_RS15795 (NVB75_15795) katB 3473438..3474979 (-) 1542 WP_258348276.1 catalase KatB -
  NVB75_RS15800 (NVB75_15800) mscL 3475266..3475682 (+) 417 WP_003215816.1 large-conductance mechanosensitive channel protein MscL -
  NVB75_RS15805 (NVB75_15805) - 3475725..3476501 (-) 777 WP_258348278.1 ferredoxin--NADP reductase -
  NVB75_RS15810 (NVB75_15810) - 3476905..3477615 (+) 711 WP_258348280.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48863.40 Da        Isoelectric Point: 6.8987

>NTDB_id=719793 NVB75_RS15785 WP_003215821.1 3471437..3472804(-) (radA) [Pseudomonas sp. CBS]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAVAPSGRSGWTGQQTQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=719793 NVB75_RS15785 WP_003215821.1 3471437..3472804(-) (radA) [Pseudomonas sp. CBS]
ATGGCAAAGGCCAAGCGCATGTATGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCACGGAATG
CGGTGCGTGGAACACCCTGACCGAAACCATGATCGAGAGCGGCGGCGCCGTGGCCCCCAGTGGCCGTTCCGGCTGGACCG
GGCAACAAACCCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATCCCGCGTTTCTCCACCGCTTCCGGTGAACTG
GACCGGGTGCTGGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGTGACCCGGGCATCGGTAAATCCACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGTATGCCGGCGCTGTATGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGTGCGCGCCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACCGCGCGCCTGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGCACC
GGGTGGCGTGTCCCAGGTGCGGGAAAGTGCCGCGCTGCTGGTGCGCTATGCGAAACAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTGACCAAAGAAGGCGCGCTGGCCGGGCCACGGGTGCTGGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGCGAGTCCGACGGGCGGTTGCGTTTGCTGCGGGCGGTGAAGAACCGTTTTGGCGCGGTCAACGAGCTGGGTGTGTTCGC
CATGACTGACCGGGGCTTGAAAGAAGTCTCCAACCCGTCGGCGATTTTTCTCACCCGCGCCCAGGAAGAAGTCCCAGGCA
GTGTGGTGATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTGGACGACAGCCACCTGGCC
AACCCGCGTCGTGTCACCCTGGGCCTGGATCAGAACCGCCTGGCGATGTTGCTGGCGGTGCTGCACCGCCACGGCGGCAT
TCCCACCCATGACCAGGACGTTTTCCTCAACGTGGTGGGCGGGGTCAAGGTATTGGAAACCGCGTCTGACCTCGCGTTGA
TGGCGGCAGTGATGTCCAGCCTGCGCAACCGGCCGTTGCCCCATGATTTGCTGGTGTTTGGCGAGGTGGGCCTGTCGGGT
GAAGTGCGCCCGGTGCCCAGCGGGCAGGAGCGCCTGAAGGAAGCGGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCGAAAGAAATGCCACCGGGGCTGCAAGTGATCGGGGTGACGCGCCTGGAGCAGGCGCTGGATGCCCTGT
TCGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0GH56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.368

100

0.475
  radA Streptococcus pneumoniae Rx1

47.149

100

0.473
  radA Streptococcus pneumoniae D39

47.149

100

0.473
  radA Streptococcus pneumoniae R6

47.149

100

0.473
  radA Streptococcus pneumoniae TIGR4

47.149

100

0.473
  radA Streptococcus mitis NCTC 12261

47.149

100

0.473