Detailed information NTG0719781

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PT288_RS18035
• Genome accession: NZ_CP117960
• Coordinates: 3720614..3721606 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain B-3008
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3715614..3726606

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PT288_RS18005	ispD	3715675..3716385 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PT288_RS18010	ispF	3716385..3716864 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PT288_RS18015	truD	3716861..3717910 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
PT288_RS18020	surE	3717891..3718652 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PT288_RS18025	pcm	3718646..3719272 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PT288_RS18030	nlpD	3719457..3720551 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
PT288_RS18035	rpoS	3720614..3721606 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PT288_RS18040	ygbN	3721700..3723064 (-)	1365	WP_000104462.1	GntP family transporter	-
PT288_RS18045	ygbM	3723153..3723929 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
PT288_RS18050	ygbL	3723934..3724572 (-)	639	WP_001278994.1	aldolase	-
PT288_RS18055	otnK	3724569..3725831 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=719781 PT288_RS18035 WP_000081550.1 3720614..3721606(+) (rpoS) [Escherichia coli strain B-3008]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=719781 PT288_RS18035 WP_000081550.1 3720614..3721606(+) (rpoS) [Escherichia coli strain B-3008]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715