Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PT288_RS12665 Genome accession   NZ_CP117960
Coordinates   2609615..2610607 (-) Length   330 a.a.
NCBI ID   WP_000224465.1    Uniprot ID   -
Organism   Escherichia coli strain B-3008     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2604615..2615607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT288_RS12655 yieP 2607507..2608199 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  PT288_RS12660 mdtD 2608222..2609649 (+) 1428 WP_001280871.1 multidrug transporter subunit MdtD -
  PT288_RS12665 cytR 2609615..2610607 (-) 993 WP_000224465.1 ribose operon transcriptional repressor RbsR Regulator
  PT288_RS12670 rbsK 2610611..2611540 (-) 930 WP_001300603.1 ribokinase -
  PT288_RS12675 rbsB 2611666..2612556 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  PT288_RS12680 rbsC 2612581..2613546 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  PT288_RS12685 rbsA 2613551..2615056 (-) 1506 WP_000387751.1 ribose ABC transporter ATP-binding protein RbsA -
  PT288_RS12690 rbsD 2615064..2615483 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36580.89 Da        Isoelectric Point: 5.2141

>NTDB_id=719759 PT288_RS12665 WP_000224465.1 2609615..2610607(-) (cytR) [Escherichia coli strain B-3008]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYPAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=719759 PT288_RS12665 WP_000224465.1 2609615..2610607(-) (cytR) [Escherichia coli strain B-3008]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCCGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364