Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NW313_RS01075 Genome accession   NZ_CP102927
Coordinates   231612..232619 (+) Length   335 a.a.
NCBI ID   WP_000224452.1    Uniprot ID   A0A085RG68
Organism   Vibrio cholerae strain N1252     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 226612..237619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW313_RS01055 metJ 226616..226933 (+) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -
  NW313_RS01060 - 227044..228321 (-) 1278 WP_001278588.1 malic enzyme-like NAD(P)-binding protein -
  NW313_RS01065 rpmE 228629..228847 (-) 219 WP_000643446.1 50S ribosomal protein L31 -
  NW313_RS01070 priA 229102..231306 (+) 2205 WP_001247858.1 primosomal protein N' -
  NW313_RS01075 cytR 231612..232619 (+) 1008 WP_000224452.1 DNA-binding transcriptional regulator CytR Regulator
  NW313_RS01080 - 232791..233342 (+) 552 WP_001884022.1 SPOR domain-containing protein -
  NW313_RS01085 hslV 233479..234036 (+) 558 WP_000208249.1 ATP-dependent protease subunit HslV -
  NW313_RS01090 hslU 234102..235433 (+) 1332 WP_001293370.1 HslU--HslV peptidase ATPase subunit -
  NW313_RS01095 - 235537..236454 (+) 918 WP_001066162.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  NW313_RS01100 rraA 236529..237044 (+) 516 WP_000456236.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37018.59 Da        Isoelectric Point: 7.0759

>NTDB_id=719737 NW313_RS01075 WP_000224452.1 231612..232619(+) (cytR) [Vibrio cholerae strain N1252]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=719737 NW313_RS01075 WP_000224452.1 231612..232619(+) (cytR) [Vibrio cholerae strain N1252]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085RG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

100

100

1
  cytR Vibrio parahaemolyticus RIMD 2210633

90.719

99.701

0.904