Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NWF33_RS16645 Genome accession   NZ_CP102921
Coordinates   3352729..3353325 (-) Length   198 a.a.
NCBI ID   WP_048323585.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain K18-45     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3347729..3358325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWF33_RS16630 (NWF33_16630) helD 3347940..3349994 (-) 2055 WP_017899462.1 DNA helicase IV -
  NWF33_RS16635 (NWF33_16635) - 3350119..3350565 (+) 447 WP_004201437.1 YccF domain-containing protein -
  NWF33_RS16640 (NWF33_16640) yccS 3350583..3352718 (+) 2136 WP_069603878.1 YccS family putative transporter -
  NWF33_RS16645 (NWF33_16645) sxy/tfoX 3352729..3353325 (-) 597 WP_048323585.1 TfoX/Sxy family DNA transformation protein Regulator
  NWF33_RS16650 (NWF33_16650) - 3353343..3353648 (-) 306 WP_153351982.1 hypothetical protein -
  NWF33_RS16655 (NWF33_16655) sulA 3353674..3354183 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  NWF33_RS16660 (NWF33_16660) ompA 3354536..3355606 (+) 1071 WP_004201430.1 porin OmpA -
  NWF33_RS16665 (NWF33_16665) matP 3355852..3356304 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  NWF33_RS16670 (NWF33_16670) - 3356490..3358247 (+) 1758 WP_017899459.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22579.34 Da        Isoelectric Point: 10.2936

>NTDB_id=719724 NWF33_RS16645 WP_048323585.1 3352729..3353325(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain K18-45]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSARLKDLPNISFHMELQLIHSGIPDVLALRQVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=719724 NWF33_RS16645 WP_048323585.1 3352729..3353325(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain K18-45]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGTTGCGCCGACATGGGCGCATCGTGCCGCTGAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGCACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGCAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5