Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PT284_RS14130 Genome accession   NZ_CP117959
Coordinates   2747850..2748857 (-) Length   335 a.a.
NCBI ID   WP_066009455.1    Uniprot ID   -
Organism   Escherichia coli strain B-2207     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2742850..2753857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT284_RS14110 otnK 2743649..2744911 (+) 1263 WP_000590403.1 3-oxo-tetronate kinase -
  PT284_RS14115 ygbL 2744908..2745546 (+) 639 WP_001278994.1 aldolase -
  PT284_RS14120 ygbM 2745551..2746327 (+) 777 WP_001136934.1 HPr family phosphocarrier protein -
  PT284_RS14125 ygbN 2746416..2747780 (+) 1365 WP_000104441.1 GntP family transporter -
  PT284_RS14130 rpoS 2747850..2748857 (-) 1008 WP_066009455.1 RNA polymerase sigma factor RpoS Regulator
  PT284_RS14135 nlpD 2748920..2750014 (-) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  PT284_RS14140 pcm 2750199..2750825 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  PT284_RS14145 surE 2750819..2751580 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  PT284_RS14150 truD 2751561..2752610 (-) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  PT284_RS14155 ispF 2752607..2753086 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PT284_RS14160 ispD 2753086..2753796 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38460.46 Da        Isoelectric Point: 4.6293

>NTDB_id=719670 PT284_RS14130 WP_066009455.1 2747850..2748857(-) (rpoS) [Escherichia coli strain B-2207]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRSICQKG

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=719670 PT284_RS14130 WP_066009455.1 2747850..2748857(-) (rpoS) [Escherichia coli strain B-2207]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCAGCATCTGTCAGAAAGGCTAG

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

96.418

0.704