Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PT284_RS04760 Genome accession   NZ_CP117959
Coordinates   837152..837781 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain B-2207     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 832152..842781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT284_RS04740 ycbZ 832553..834313 (-) 1761 WP_000156518.1 Lon protease family protein -
  PT284_RS04745 matP 834499..834951 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PT284_RS04750 ompA 835027..836067 (-) 1041 WP_000750416.1 porin OmpA -
  PT284_RS04755 sulA 836424..836933 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PT284_RS04760 sxy/tfoX 837152..837781 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PT284_RS04765 yccS 837744..839906 (-) 2163 WP_000875061.1 YccS family putative transporter -
  PT284_RS04770 yccF 839916..840362 (-) 447 WP_001261235.1 YccF domain-containing protein -
  PT284_RS04775 helD 840485..842539 (+) 2055 WP_078045951.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=719644 PT284_RS04760 WP_000839153.1 837152..837781(+) (sxy/tfoX) [Escherichia coli strain B-2207]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=719644 PT284_RS04760 WP_000839153.1 837152..837781(+) (sxy/tfoX) [Escherichia coli strain B-2207]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1