Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PT284_RS01615 Genome accession   NZ_CP117959
Coordinates   184793..185398 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain B-2207     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 179793..190398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT284_RS01585 rsmS 180498..180659 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  PT284_RS01590 priC 180673..181200 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  PT284_RS01595 ybaN 181270..181647 (+) 378 WP_001188905.1 DUF454 family protein -
  PT284_RS01600 apt 181800..182351 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PT284_RS01605 dnaX 182480..184411 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  PT284_RS01610 ybaB 184464..184793 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PT284_RS01615 recR 184793..185398 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PT284_RS01620 htpG 185508..187382 (+) 1875 WP_078045912.1 molecular chaperone HtpG -
  PT284_RS01625 adk 187563..188207 (+) 645 WP_001220233.1 adenylate kinase -
  PT284_RS01630 hemH 188443..189399 (+) 957 WP_066009145.1 ferrochelatase -
  PT284_RS01635 aes 189399..190349 (-) 951 Protein_178 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=719636 PT284_RS01615 WP_001195025.1 184793..185398(+) (recR) [Escherichia coli strain B-2207]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=719636 PT284_RS01615 WP_001195025.1 184793..185398(+) (recR) [Escherichia coli strain B-2207]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443