Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PBV52_RS36025 Genome accession   NZ_CP117866
Coordinates   8006912..8007688 (-) Length   258 a.a.
NCBI ID   WP_128430851.1    Uniprot ID   -
Organism   Streptomyces sp. T12     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8001912..8012688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBV52_RS36015 (PBV52_36015) - 8003393..8004217 (+) 825 WP_274244193.1 GNAT family N-acetyltransferase -
  PBV52_RS36020 (PBV52_36020) - 8004754..8006739 (+) 1986 WP_274244195.1 ATP-dependent DNA helicase -
  PBV52_RS36025 (PBV52_36025) dinR/lexA 8006912..8007688 (-) 777 WP_128430851.1 transcriptional repressor LexA Regulator
  PBV52_RS36030 (PBV52_36030) nrdR 8008253..8008822 (+) 570 WP_274244197.1 transcriptional regulator NrdR -
  PBV52_RS36035 (PBV52_36035) - 8008985..8011885 (+) 2901 WP_274244198.1 vitamin B12-dependent ribonucleotide reductase -
  PBV52_RS36040 (PBV52_36040) - 8012011..8012544 (-) 534 WP_274244201.1 TerD family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27994.75 Da        Isoelectric Point: 7.0666

>NTDB_id=719612 PBV52_RS36025 WP_128430851.1 8006912..8007688(-) (dinR/lexA) [Streptomyces sp. T12]
MTTTADSATITAQDRSQGRLEPVHAMNEAMNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAAVQPTDTTGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYEPI
PGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=719612 PBV52_RS36025 WP_128430851.1 8006912..8007688(-) (dinR/lexA) [Streptomyces sp. T12]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCATGAATCCCGAGGGACACAAGCGATCCCTCCCGGGCCGACCTCCGGGCATCCGGGCGGACAGCTCGGGGCTCA
CCGATCGGCAGCGCCGCGTGATCGAGGTCATCAGGGATTCCGTGCAGCGGCGCGGCTATCCGCCGTCGATGCGGGAGATC
GGCCAGGCGGTCGGCCTGTCCAGCACGTCCTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTCCGCCG
CGACCCGCACCGACCGCGCGCATACGAGGTGCGCGGCTCCGACCAGGCAGCCGTGCAGCCCACGGACACCACCGGCAAGC
CCGCCGCGTCGTACGTCCCGCTGGTCGGCCGCATCGCTGCCGGTGGCCCGATCCTTGCGGAGGAGTCGGTCGAGGACGTC
TTCCCGCTCCCCCGGCAGCTGGTCGGCGACGGCGAACTGTTCGTGCTGAAGGTCGTCGGTGACTCGATGATCGAGGCCGC
GATCTGCGACGGCGACTGGGTCACGGTCCGGCGCCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTGGACG
GCGAGGCCACGGTCAAGCGTTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAACTCCGCGTACGAGCCGATC
CCCGGCGACGACGCGACCATCCTGGGCAAGGTGGTGGCAGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.667

81.395

0.38