Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PBV52_RS14255 Genome accession   NZ_CP117866
Coordinates   3202541..3204469 (+) Length   642 a.a.
NCBI ID   WP_274238719.1    Uniprot ID   -
Organism   Streptomyces sp. T12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3197541..3209469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBV52_RS14240 (PBV52_14240) - 3198704..3199012 (+) 309 WP_274238716.1 YtxH domain-containing protein -
  PBV52_RS14245 (PBV52_14245) - 3199189..3200646 (+) 1458 WP_274238717.1 FGGY-family carbohydrate kinase -
  PBV52_RS14250 (PBV52_14250) rcrP 3200808..3202541 (+) 1734 WP_274238718.1 ABC transporter ATP-binding protein Regulator
  PBV52_RS14255 (PBV52_14255) rcrQ 3202541..3204469 (+) 1929 WP_274238719.1 ABC transporter ATP-binding protein Regulator
  PBV52_RS14260 (PBV52_14260) - 3204625..3205953 (-) 1329 WP_274238720.1 RNA polymerase sigma factor -
  PBV52_RS14265 (PBV52_14265) dnaG 3206068..3207984 (-) 1917 WP_274238722.1 DNA primase -
  PBV52_RS14270 (PBV52_14270) - 3208115..3209380 (-) 1266 WP_274238723.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69633.14 Da        Isoelectric Point: 5.5731

>NTDB_id=719559 PBV52_RS14255 WP_274238719.1 3202541..3204469(+) (rcrQ) [Streptomyces sp. T12]
MAGPMGRMMAGGGPDQHSLDFKVSGRRLVAQFKPERLTIYALLFCVVVSVGLSVAGPKILGEATDLVFAGIVGRQFEPGM
TKEQVLAAMRERGDGQIADMLRSTDFTPGEGIDFGAVGSVLLFALAVFVVAGLLMAVATRLVNRAVNRTMYRMREDVQVK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWLLALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQEESAKQFAEQNEALYEAGFKAQFNSGIMQPLMLFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVPGVRPEELRGRVALE
GVSFRYDPEKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSSGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRKVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHGELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=719559 PBV52_RS14255 WP_274238719.1 3202541..3204469(+) (rcrQ) [Streptomyces sp. T12]
ATGGCCGGGCCGATGGGGCGGATGATGGCCGGCGGCGGCCCCGATCAGCACTCGCTGGACTTCAAGGTGTCGGGCAGGCG
GCTGGTCGCCCAGTTCAAGCCCGAGCGGCTCACCATCTACGCGCTGCTGTTCTGCGTGGTCGTGAGCGTGGGCCTGTCGG
TCGCCGGGCCGAAGATCCTCGGCGAGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGCAGTTCGAGCCCGGGATG
ACCAAGGAGCAGGTCCTCGCGGCGATGCGGGAGCGCGGCGACGGCCAGATCGCCGACATGCTGCGCAGCACCGACTTCAC
GCCGGGCGAGGGCATCGACTTCGGCGCGGTGGGCAGTGTGCTGCTGTTCGCGCTCGCCGTGTTCGTCGTCGCCGGTCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTGAACCGCACCATGTACCGGATGCGCGAGGACGTCCAGGTGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTGCTGTCCCGGGCGACCAACGACATCGACAA
CATCGGGCAGACGCTGCAGCAGTCGATGGGCCAGCTCATCAACTCCGTGCTCACCATCATCGGTGTGCTGGCGATGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTGGTCGCCACACGGGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGGTCGACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCCAAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGCTGTTCGTGTCGAACATCAACTACGTGCTGGTTGCG
GTGGTCGGCGGTCTGCGGGTCGCGTCGGGCTCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTCGTGCAGTCGGGTGTCGCGTCCGCCGAGCGGATCTTCGAGC
TCCTGGACGCGGAGGAGCAGGAGGCGGATCCCGTACCCGGGGTGCGGCCGGAGGAGCTGCGGGGACGGGTGGCGCTGGAG
GGGGTGTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGGCGGTGGAGCCCGGGCACACGGTCGC
GATCGTCGGGCCCACGGGTGCCGGCAAGACGACCCTGGTGAACCTGCTGATGCGGTTCTACGACGTCTCGTCCGGGCGCA
TCACCCTCGACGGGGTCGACATCGCGCGGATGTCCCGGGACGAACTGCGGGCCGGGATCGGGATGGTGCTGCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCCTCGCGGAAGGTGACCCGGGGCGAGATCGAGGAAGC
CGCGCGGGCCGCCCACGCCGACCGGTTCATCCGTACGCTGCCCGACGGGTACGACACGGTGATCGACGACGAGGGGTCGG
GGGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCTCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGTTCCGTGGACACGCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGAAACTGGCGCACGGGCGTACGTCGTT
CGTCATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGGGCGATCGTGGAACAGG
GCGCGCACGGCGAGCTGTTGGCGGCCGACGGGGCGTATGCGCGGTTGTACAAGGCGCAGTTCGCTCAGGCGGTGGCCGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.452

96.573

0.4