Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PBV52_RS14250 Genome accession   NZ_CP117866
Coordinates   3200808..3202541 (+) Length   577 a.a.
NCBI ID   WP_274238718.1    Uniprot ID   -
Organism   Streptomyces sp. T12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3195808..3207541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBV52_RS14220 (PBV52_14220) - 3196564..3197187 (-) 624 WP_306801489.1 ISL3 family transposase -
  PBV52_RS14240 (PBV52_14240) - 3198704..3199012 (+) 309 WP_274238716.1 YtxH domain-containing protein -
  PBV52_RS14245 (PBV52_14245) - 3199189..3200646 (+) 1458 WP_274238717.1 FGGY-family carbohydrate kinase -
  PBV52_RS14250 (PBV52_14250) rcrP 3200808..3202541 (+) 1734 WP_274238718.1 ABC transporter ATP-binding protein Regulator
  PBV52_RS14255 (PBV52_14255) rcrQ 3202541..3204469 (+) 1929 WP_274238719.1 ABC transporter ATP-binding protein Regulator
  PBV52_RS14260 (PBV52_14260) - 3204625..3205953 (-) 1329 WP_274238720.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62917.05 Da        Isoelectric Point: 6.1943

>NTDB_id=719558 PBV52_RS14250 WP_274238718.1 3200808..3202541(+) (rcrP) [Streptomyces sp. T12]
MLIRLLRTYLRPYRKPIAWLVLLQFLQTCATLYLPTLNADIIDTGVVNGDTGYILSYGALMIGISLAQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPVLGISVTLIVRRLRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKSNAELTEMAMGTGKLLAL
MFPIVMTVINLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PASPVRELRRHGHLEIRGAGFRYPGAEEPVLKAIDLVALPGETTAVIGSTGSGKSTLLGLVPRLFDATDGRVLVDGEDVA
SVDPQLLAKTVSLVPQRPYLFAGTVATNLRYGNPDATDEELWHALQVAQAREFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETSDATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=719558 PBV52_RS14250 WP_274238718.1 3200808..3202541(+) (rcrP) [Streptomyces sp. T12]
GTGCTCATACGACTTCTGCGCACCTACCTCAGGCCCTACCGAAAACCCATCGCCTGGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCGACGCTGAACGCGGACATCATCGACACGGGCGTCGTCAACGGCGACACCGGCTACA
TCCTGTCCTACGGCGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
CGGACCGCGGCCGCGCTCGGGCGGGACGTGCGGGCGGCCGTCTTCGACCGGGTGCAGTCGTTCTCGGCGCGTGAGGTCGG
CCACTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTGGATGTGCCGCTGTCCGCGGTG
CTGGTCGCCGTGGTGCCCGTGCTCGGCATCAGTGTGACCTTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGACCATGCA
GGAGCGCCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGTGCCTTCGTGCGCGACG
AGTACGAGCAGCAGCGCTTCAGGAAGTCCAACGCCGAGCTCACCGAGATGGCGATGGGCACCGGCAAGCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGATCAACCTGTCGTCGATCGCGGTGGTCTGGTTCGGGGCGCATCGCATCGACAGCGG
CGGGATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTATCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGACACGTCGTCGAGCGTGGTGCCG
CCGGCCTCCCCCGTGCGGGAGCTGCGCCGGCACGGTCATCTGGAGATCCGGGGCGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGGCGATCGACCTGGTCGCGCTGCCGGGTGAGACGACGGCCGTGATCGGGTCGACCGGCAGCGGGA
AGTCGACCCTGCTGGGGCTCGTCCCGCGGCTGTTCGACGCGACCGACGGGCGGGTGCTGGTGGACGGGGAGGACGTGGCG
AGCGTCGATCCGCAGCTGCTGGCGAAGACCGTGAGCCTCGTACCGCAGCGGCCGTACCTGTTCGCCGGGACGGTGGCGAC
CAACCTCCGCTACGGCAATCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGCAGGTGGCGCAGGCCAGGGAGTTCG
TGGAGCGGCTGGAGGGCGGGCTCGACGCGCCCATCGCACAGGGCGGCACGAATGTGTCCGGTGGTCAGCGGCAGCGGCTG
GCGATCGCGCGAACCCTCGTCCAGCGTCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACGGA
CGCGGCGCTGCGTGCGGCCCTCGCCCGCGAGACCTCCGATGCCACCGTCGTCATCGTCGCCCAGCGCGTGGCGACCATCC
GGGACGCGGACCGGATCGTCGTGCTCGACGAGGGGCGGGTCGTCGGCACGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(21-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.041

100

0.395