Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   PT012_RS09315 Genome accession   NZ_CP117820
Coordinates   2024054..2026210 (-) Length   718 a.a.
NCBI ID   WP_027700177.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain ICMP 8740     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2019054..2031210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT012_RS09300 (PT012_09300) - 2020404..2021672 (-) 1269 WP_027700178.1 lipase family protein -
  PT012_RS09305 (PT012_09305) - 2022251..2023443 (-) 1193 Protein_1816 cytochrome P450 -
  PT012_RS09310 (PT012_09310) - 2023806..2023979 (-) 174 WP_169719188.1 hypothetical protein -
  PT012_RS09315 (PT012_09315) recG 2024054..2026210 (-) 2157 WP_027700177.1 ATP-dependent DNA helicase RecG Machinery gene
  PT012_RS09320 (PT012_09320) - 2026219..2026602 (-) 384 WP_024749306.1 RidA family protein -
  PT012_RS09325 (PT012_09325) - 2026805..2028976 (-) 2172 WP_027700176.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 718 a.a.        Molecular weight: 78653.30 Da        Isoelectric Point: 8.3729

>NTDB_id=719463 PT012_RS09315 WP_027700177.1 2024054..2026210(-) (recG) [Xylella fastidiosa subsp. multiplex strain ICMP 8740]
MPRARSHAIDLNVAGNAPLSVLPRVGPVLAGKCAARGIFTLQDLWLLLPLRYEDRTRLTPIAELQDGVAVQIEARVEAVE
RSFRYRPLLRVVLSDDAHHILTMRFFHFRAAQIARFTVGTRVRAYGVPKLGQYGWEIVHPSYRILAPGEAVSLNDCLDPV
YPVIDGVGPAIVRQLIREALEHLPTDAVLELLPDVWLSDLGLPTLRTALLIMHRPPLDADIARLMVGTHPAQQRLSLEEL
LAHQLSLRRQRIALQRHSAPALPDGAALVASLLHALPFHLTAAQQRVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALA
ALLAVEQNKQVALAAPTALLAEQHFINLRDWLEPLGVRVHWLAAKVTGKARLQALNDVASGDAQVVVGTHALMQESVVFH
DLALTIVDEQHRFGVHQRLLLRDKGAIAGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRP
ELVERIRLACAQGRQVYWVCTLIDESQTEAEQAPPSSNDIGHRSEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRT
MRAFKYNEIDVLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRIGRGSVVSSCVLLYQPPLSMLARQRLQIMRQ
TNDGFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRVYSLANMLLDESPQLADQVIARWIGSAVRYASA

Nucleotide


Download         Length: 2157 bp        

>NTDB_id=719463 PT012_RS09315 WP_027700177.1 2024054..2026210(-) (recG) [Xylella fastidiosa subsp. multiplex strain ICMP 8740]
ATGCCGCGTGCACGTTCGCATGCCATCGACTTGAACGTAGCTGGCAATGCCCCATTGTCGGTGCTGCCGCGGGTTGGGCC
GGTATTAGCTGGAAAATGCGCTGCACGTGGCATCTTCACCTTGCAGGATTTGTGGCTACTGCTCCCATTACGTTATGAGG
ACCGTACCCGGCTAACCCCGATTGCCGAGCTTCAGGATGGGGTTGCGGTTCAGATCGAGGCCCGAGTGGAAGCGGTGGAG
CGTAGTTTCCGTTACCGGCCGCTATTACGTGTGGTGTTGTCCGACGACGCACATCACATACTGACGATGCGTTTTTTCCA
TTTTCGCGCCGCACAGATTGCACGGTTTACTGTCGGCACACGGGTGCGTGCGTATGGCGTACCCAAACTTGGCCAATATG
GTTGGGAGATTGTCCATCCCAGCTACCGCATTCTTGCCCCTGGTGAAGCTGTCAGCCTCAATGACTGCTTGGACCCGGTG
TATCCGGTGATTGATGGTGTGGGGCCTGCCATCGTGCGTCAGCTCATCCGCGAAGCGTTGGAACATTTACCTACGGATGC
AGTCTTAGAACTCTTGCCAGACGTTTGGTTGAGTGACCTTGGCCTGCCAACGCTGCGTACTGCCCTACTGATCATGCACC
GGCCCCCGCTGGATGCGGATATTGCCCGATTGATGGTGGGCACTCACCCCGCGCAGCAGCGCTTGTCGTTGGAAGAATTG
CTTGCCCACCAACTCAGCCTGCGTCGCCAGCGTATTGCATTGCAACGTCATTCCGCCCCCGCATTACCTGATGGAGCGGC
TTTGGTGGCCTCTTTGTTGCATGCACTGCCGTTTCACCTCACTGCTGCGCAGCAACGGGTATTCGCCCAGATTGCTGCTG
ATGTGGCCAAGCCGGTCCCAATGCTGCGTCTTGTGCAGGGTGATGTTGGCAGCGGTAAGACCGTGGTTGCAGCATTGGCC
GCATTGCTTGCTGTTGAGCAAAACAAGCAGGTGGCTCTGGCGGCACCGACAGCGTTACTGGCCGAGCAACACTTTATCAA
CCTGCGTGACTGGCTGGAGCCATTGGGCGTGCGTGTGCATTGGTTGGCTGCCAAGGTGACCGGCAAGGCCCGTCTCCAAG
CGCTGAATGATGTGGCCTCTGGTGATGCGCAGGTGGTGGTCGGCACACATGCCCTGATGCAGGAGTCTGTGGTGTTTCAT
GACTTGGCACTGACCATTGTCGATGAACAGCACCGTTTTGGCGTCCATCAGCGCTTGTTGCTTCGTGACAAAGGGGCCAT
TGCTGGCATTGTGCCGCATCAGTTAGTGATGACCGCTACACCGATTCCACGCACCTTAGCGATGGCTGCGTATGCTGATT
TGGATGTTTCGGTGATTGACGAAATGCCGCCTGGCCGTACCCCGGTGCAAACGAATGTATTGAGTGCTGAGCGTCGCCCG
GAATTGGTGGAACGTATCCGTCTGGCTTGTGCTCAGGGGCGCCAGGTTTATTGGGTGTGTACGCTGATCGACGAAAGCCA
AACGGAAGCAGAACAGGCACCCCCCAGCAGTAACGATATTGGGCATCGCAGCGAAGTACAGGCGGCACAGGCCACCTATG
AAGCACTGTCTGCACAATTGCCTGGTGTCCGTGTCGGACTCGTGCATGGGCGCATGAAAGCAGCGGAAAAACAGCGGACA
ATGCGTGCATTCAAATACAACGAAATTGATGTCTTGGTTGCTACCACGGTGATTGAGGTGGGTGTCGATGTCCCCAATGC
GTCGCTCATGATTATCGAAAATGCTGAGCGTTTGGGTTTAGCGCAACTCCATCAGTTACGTGGTCGGATCGGACGTGGTT
CTGTTGTGTCAAGTTGCGTTCTGTTGTATCAGCCCCCGCTGTCGATGCTGGCGCGTCAGCGTCTGCAAATCATGCGCCAG
ACGAACGATGGTTTTGCGATTGCTGAAAAAGATCTGGAATTACGTGGTCCCGGCGAATTGTTGGGGACACGTCAAACAGG
TCTTGCAGCGTTTCGTGTTGCTGACCTTGCCCGCGATGCCCATCTGCTGCCCCGCGTGTATTCGTTGGCGAACATGTTGC
TTGACGAATCGCCACAGTTAGCTGATCAAGTGATTGCGCGCTGGATTGGTAGTGCGGTGCGTTATGCATCCGCCTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(35-181)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(641-701)

Helicase conserved C-terminal domain (Helicase_C)

(534-613)

DEAD/DEAH box helicase (DEAD)

(283-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

47.832

96.379

0.461