Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NWE25_RS13175 Genome accession   NZ_CP102866
Coordinates   2740869..2741621 (-) Length   250 a.a.
NCBI ID   WP_046702260.1    Uniprot ID   -
Organism   Bacillus velezensis strain YS-AT-DS1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2735869..2746621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE25_RS13150 (NWE25_13150) mreC 2736305..2737168 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  NWE25_RS13155 (NWE25_13155) mreB 2737199..2738212 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  NWE25_RS13160 (NWE25_13160) radC 2738304..2738999 (-) 696 WP_007408165.1 DNA repair protein RadC -
  NWE25_RS13165 (NWE25_13165) - 2739031..2739600 (-) 570 WP_007408164.1 nucleoside triphosphate pyrophosphatase -
  NWE25_RS13170 (NWE25_13170) - 2739741..2740742 (-) 1002 WP_032866593.1 SPOR domain-containing protein -
  NWE25_RS13175 (NWE25_13175) comC 2740869..2741621 (-) 753 WP_046702260.1 A24 family peptidase Machinery gene
  NWE25_RS13180 (NWE25_13180) - 2741761..2743053 (-) 1293 WP_046702259.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NWE25_RS13185 (NWE25_13185) - 2743112..2745754 (-) 2643 WP_044801613.1 valine--tRNA ligase -
  NWE25_RS13190 (NWE25_13190) - 2746207..2746398 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27161.90 Da        Isoelectric Point: 9.5938

>NTDB_id=719438 NWE25_RS13175 WP_046702260.1 2740869..2741621(-) (comC) [Bacillus velezensis strain YS-AT-DS1]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLGSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=719438 NWE25_RS13175 WP_046702260.1 2740869..2741621(-) (comC) [Bacillus velezensis strain YS-AT-DS1]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGTTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGTTGGGTTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58