Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NWE25_RS07025 Genome accession   NZ_CP102866
Coordinates   1405686..1406282 (+) Length   198 a.a.
NCBI ID   WP_038457860.1    Uniprot ID   -
Organism   Bacillus velezensis strain YS-AT-DS1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1400686..1411282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE25_RS06995 (NWE25_06995) - 1400900..1401355 (+) 456 WP_007409622.1 flavodoxin -
  NWE25_RS07000 (NWE25_07000) dapD 1401437..1402147 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NWE25_RS07005 (NWE25_07005) - 1402218..1403342 (+) 1125 WP_046702332.1 N-acetyldiaminopimelate deacetylase -
  NWE25_RS07010 (NWE25_07010) - 1403403..1403648 (+) 246 WP_003154596.1 YkuS family protein -
  NWE25_RS07015 (NWE25_07015) - 1403682..1404488 (-) 807 WP_032874739.1 mechanosensitive ion channel family protein -
  NWE25_RS07020 (NWE25_07020) - 1404777..1405235 (+) 459 WP_038457859.1 TlpA disulfide reductase family protein -
  NWE25_RS07025 (NWE25_07025) rok 1405686..1406282 (+) 597 WP_038457860.1 transcriptional regulator Rok Regulator
  NWE25_RS07030 (NWE25_07030) - 1406306..1407298 (-) 993 WP_038457861.1 hypothetical protein -
  NWE25_RS07035 (NWE25_07035) - 1407442..1408044 (+) 603 WP_007611112.1 molybdenum cofactor guanylyltransferase -
  NWE25_RS07040 (NWE25_07040) - 1408096..1409115 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  NWE25_RS07045 (NWE25_07045) glp 1409133..1410425 (+) 1293 WP_038457863.1 gephyrin-like molybdotransferase Glp -
  NWE25_RS07050 (NWE25_07050) mobB 1410386..1410907 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=719413 NWE25_RS07025 WP_038457860.1 1405686..1406282(+) (rok) [Bacillus velezensis strain YS-AT-DS1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNAGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=719413 NWE25_RS07025 WP_038457860.1 1405686..1406282(+) (rok) [Bacillus velezensis strain YS-AT-DS1]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATGCAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843