Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   PT257_RS11380 Genome accession   NZ_CP117818
Coordinates   2571576..2572928 (-) Length   450 a.a.
NCBI ID   WP_051720937.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5916     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2566576..2577928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT257_RS11365 (PT257_11365) pilU 2567317..2568438 (-) 1122 WP_042755108.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PT257_RS11370 (PT257_11370) - 2568528..2570456 (-) 1929 WP_042755107.1 L-gulono-gamma-lactone oxidase -
  PT257_RS11375 (PT257_11375) - 2570743..2571579 (-) 837 WP_042755106.1 phytanoyl-CoA dioxygenase family protein -
  PT257_RS11380 (PT257_11380) radA/sms 2571576..2572928 (-) 1353 WP_051720937.1 DNA repair protein RadA Machinery gene
  PT257_RS11385 (PT257_11385) - 2573163..2574041 (+) 879 WP_042755104.1 lpg2327 family Dot/Icm T4SS effector -
  PT257_RS11390 (PT257_11390) lem22 2574306..2574689 (+) 384 WP_014842288.1 Dot/Icm T4SS effector Lem22 -
  PT257_RS11395 (PT257_11395) - 2574883..2575113 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  PT257_RS11400 (PT257_11400) - 2575094..2575990 (+) 897 WP_011947174.1 polyprenyl synthetase family protein -
  PT257_RS11405 (PT257_11405) bioC 2576034..2576888 (-) 855 WP_015961430.1 malonyl-ACP O-methyltransferase BioC -
  PT257_RS11410 (PT257_11410) comFC 2576932..2577636 (+) 705 WP_015961431.1 ComF family protein Machinery gene

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 48858.44 Da        Isoelectric Point: 7.7495

>NTDB_id=719401 PT257_RS11380 WP_051720937.1 2571576..2572928(-) (radA/sms) [Legionella pneumophila strain D5916]
MKVKTQFVCNQCAAIFKQWAGQCTQCGAWNSIVEEGIVPENKTSRSGQWANQRSVITAVEDVVMDKIVRMDCGISELNRV
LGGGLVYGSVVLIGGDPGIGKSTLLLQTLANLSMQETVLYVTGEESLQQVAMRAQRLGLPLAGLRLLAETQVESIIAQAQ
KEKPRIIVVDSVQTIFTEAISSAPGGVSQVRESAAQLVRYAKMTNTAIFLVGHVTKEGTLAGPRVLEHMVDSVLYFEGQN
DSRFRVIRAIKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRQPEPTPGSAVMVTWEGSRPMLVEVQALVDEAHGQQAK
RVTAGLEHNRLAILLAVLHRHGGIATYDQDVFINVVGGVKVTETASDLALLAAVISSLRNRIFDSETIIFGEVGLAGEIR
PVQSGQERIKEAIKHGFKRAIVPFANAPKQQIDSMTVEPVKHLRDVLEKM

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=719401 PT257_RS11380 WP_051720937.1 2571576..2572928(-) (radA/sms) [Legionella pneumophila strain D5916]
ATGAAAGTGAAAACCCAGTTTGTTTGTAATCAATGCGCGGCTATTTTTAAACAGTGGGCAGGACAATGCACTCAATGTGG
CGCCTGGAATTCCATTGTTGAAGAAGGGATTGTGCCTGAAAACAAGACTTCACGAAGTGGGCAATGGGCTAATCAGCGCT
CTGTTATCACTGCTGTTGAAGACGTCGTCATGGACAAAATAGTACGTATGGATTGTGGTATATCCGAGCTCAACCGGGTT
TTGGGAGGGGGGCTGGTTTATGGCTCGGTTGTTTTGATTGGAGGGGATCCGGGGATTGGTAAATCCACCTTACTGTTGCA
AACGCTGGCTAATTTATCTATGCAAGAAACAGTATTGTATGTGACGGGGGAAGAATCATTACAACAAGTTGCCATGCGTG
CCCAAAGATTGGGACTACCTTTGGCCGGATTGCGGCTATTGGCAGAAACTCAGGTTGAATCCATCATTGCTCAAGCCCAA
AAGGAAAAACCGCGAATTATTGTCGTCGATTCAGTACAAACGATATTCACTGAAGCCATAAGTTCTGCTCCGGGAGGAGT
TAGTCAAGTCAGGGAATCAGCAGCACAATTGGTTCGTTATGCCAAGATGACCAATACGGCCATCTTCCTGGTAGGGCATG
TCACCAAGGAAGGAACATTAGCCGGGCCTCGGGTGTTAGAACATATGGTTGATAGTGTTCTCTATTTTGAGGGGCAAAAT
GATAGCCGCTTCAGAGTCATTCGCGCCATTAAAAATCGTTTTGGCGCTGTCAATGAATTAGGTGTATTTGCGATGACTGA
CAAAGGCCTGAAGGAGGTAGCCAACCCCTCAGCTATTTTTTTATCTCGCCAGCCCGAACCTACGCCTGGCAGTGCAGTGA
TGGTGACTTGGGAAGGATCAAGACCCATGTTGGTAGAAGTACAAGCATTGGTTGATGAGGCCCATGGTCAGCAAGCGAAA
CGCGTTACTGCGGGTCTTGAGCATAATCGTCTGGCCATTTTGTTAGCTGTTTTACACCGTCATGGAGGTATCGCTACTTA
CGATCAGGATGTTTTTATCAATGTAGTCGGGGGAGTGAAAGTGACTGAAACAGCGAGTGATTTGGCTTTGTTGGCTGCAG
TGATCTCAAGTTTACGTAATCGTATATTTGATAGTGAAACCATCATATTCGGTGAAGTGGGATTAGCTGGGGAAATCAGA
CCAGTGCAAAGTGGTCAAGAACGCATTAAGGAGGCTATAAAACATGGATTCAAGCGTGCTATAGTCCCTTTTGCCAACGC
TCCCAAACAGCAAATCGATTCCATGACGGTAGAGCCAGTTAAACATTTGCGAGATGTATTGGAGAAAATGTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Subunit ChlI of Mg-chelatase (ChlI)

(328-426)

AAA domain (AAA_25)

(74-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.492

95.778

0.464
  radA Streptococcus mitis SK321

48.341

93.778

0.453
  radA Streptococcus pneumoniae Rx1

48.341

93.778

0.453
  radA Streptococcus pneumoniae D39

48.341

93.778

0.453
  radA Streptococcus pneumoniae R6

48.341

93.778

0.453
  radA Streptococcus pneumoniae TIGR4

48.341

93.778

0.453
  radA Streptococcus mitis NCTC 12261

48.104

93.778

0.451