Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NWE25_RS05315 Genome accession   NZ_CP102866
Coordinates   1093451..1094029 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain YS-AT-DS1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088451..1099029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE25_RS19880 - 1088952..1089467 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  NWE25_RS19885 - 1089711..1090370 (-) 660 Protein_987 protoglobin domain-containing protein -
  NWE25_RS05300 (NWE25_05300) - 1090367..1091890 (-) 1524 WP_258334742.1 FAD-dependent oxidoreductase -
  NWE25_RS05305 (NWE25_05305) - 1092015..1092872 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  NWE25_RS05310 (NWE25_05310) - 1092902..1093135 (-) 234 WP_007409189.1 IDEAL domain-containing protein -
  NWE25_RS05315 (NWE25_05315) comK 1093451..1094029 (+) 579 WP_003155179.1 competence protein ComK Regulator
  NWE25_RS05320 (NWE25_05320) - 1094175..1094543 (+) 369 WP_012117235.1 iron chaperone -
  NWE25_RS05325 (NWE25_05325) - 1094570..1094941 (+) 372 WP_038457532.1 iron chaperone -
  NWE25_RS05330 (NWE25_05330) - 1095064..1095573 (+) 510 WP_038457534.1 MepB family protein -
  NWE25_RS05335 (NWE25_05335) - 1095802..1096512 (-) 711 WP_029325960.1 YrpD family protein -
  NWE25_RS05340 (NWE25_05340) - 1096708..1096977 (+) 270 WP_038457536.1 excalibur calcium-binding domain-containing protein -
  NWE25_RS05345 (NWE25_05345) - 1097010..1097327 (-) 318 WP_003155166.1 YbjQ family protein -
  NWE25_RS05350 (NWE25_05350) - 1097369..1098838 (-) 1470 WP_038457538.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=719401 NWE25_RS05315 WP_003155179.1 1093451..1094029(+) (comK) [Bacillus velezensis strain YS-AT-DS1]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=719401 NWE25_RS05315 WP_003155179.1 1093451..1094029(+) (comK) [Bacillus velezensis strain YS-AT-DS1]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCTGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823