Detailed information NTG0719374

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PT257_RS05805
• Genome accession: NZ_CP117818
• Coordinates: 1304648..1305673 (+)
• Length: 341 a.a.
• NCBI ID: WP_011946339.1
• Uniprot ID: -
• Organism: Legionella pneumophila strain D5916
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1299648..1310673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PT257_RS05775 (PT257_05775)	-	1300080..1300397 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
PT257_RS05780 (PT257_05780)	-	1300433..1300804 (+)	372	WP_011213591.1	protease inhibitor I42 family protein	-
PT257_RS05785 (PT257_05785)	-	1300861..1302576 (-)	1716	WP_061513441.1	NAD-dependent malic enzyme	-
PT257_RS05790 (PT257_05790)	-	1302656..1303039 (+)	384	WP_011946336.1	hypothetical protein	-
PT257_RS05795 (PT257_05795)	surE	1303042..1303800 (+)	759	WP_011946337.1	5'/3'-nucleotidase SurE	-
PT257_RS05800 (PT257_05800)	-	1303819..1304562 (+)	744	WP_011213595.1	peptidoglycan DD-metalloendopeptidase family protein	-
PT257_RS05805 (PT257_05805)	rpoS	1304648..1305673 (+)	1026	WP_011946339.1	RNA polymerase sigma factor RpoS	Regulator
PT257_RS05810 (PT257_05810)	hmgA	1305773..1307023 (-)	1251	WP_011946340.1	homogentisate 1,2-dioxygenase	-
PT257_RS05815 (PT257_05815)	-	1307171..1307914 (+)	744	WP_011946341.1	YebC/PmpR family DNA-binding transcriptional regulator	-
PT257_RS05820 (PT257_05820)	ruvC	1307914..1308438 (+)	525	WP_011946342.1	crossover junction endodeoxyribonuclease RuvC	-
PT257_RS05825 (PT257_05825)	ruvA	1308435..1309034 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
PT257_RS05830 (PT257_05830)	-	1309086..1309406 (+)	321	WP_011946343.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39467.72 Da
• Isoelectric Point: 4.3705

>NTDB_id=719374 PT257_RS05805 WP_011946339.1 1304648..1305673(+) (rpoS) [Legionella pneumophila strain D5916]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEDLDEFPEFTDDEVFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=719374 PT257_RS05805 WP_011946339.1 1304648..1305673(+) (rpoS) [Legionella pneumophila strain D5916]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGATCTTGATGAATTTCCAGAGTTTACTGATGATGAAG
TTTTTCCTTCATTTCAGCGCGGGAAAAACATTGCTAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGCTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTGGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGTCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548