Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NWS42_RS09225 Genome accession   NZ_CP102865
Coordinates   1975494..1976447 (-) Length   317 a.a.
NCBI ID   WP_263560823.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain S3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1970494..1981447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWS42_RS09200 - 1970962..1971873 (-) 912 WP_017425550.1 aldo/keto reductase -
  NWS42_RS09205 - 1972032..1972775 (-) 744 WP_017425551.1 alpha/beta hydrolase -
  NWS42_RS09210 - 1972809..1973789 (-) 981 WP_017425552.1 siderophore ABC transporter substrate-binding protein -
  NWS42_RS09215 - 1973802..1974560 (-) 759 WP_013373133.1 ABC transporter ATP-binding protein -
  NWS42_RS09220 - 1974554..1975504 (-) 951 WP_017425553.1 iron chelate uptake ABC transporter family permease subunit -
  NWS42_RS09225 ceuB 1975494..1976447 (-) 954 WP_263560823.1 ABC transporter permease Machinery gene
  NWS42_RS09230 - 1976772..1977449 (+) 678 WP_031462262.1 response regulator transcription factor -
  NWS42_RS09235 - 1977450..1978367 (+) 918 WP_263560824.1 sensor histidine kinase -
  NWS42_RS09240 - 1978475..1979152 (+) 678 WP_017425557.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34686.64 Da        Isoelectric Point: 9.9012

>NTDB_id=719359 NWS42_RS09225 WP_263560823.1 1975494..1976447(-) (ceuB) [Paenibacillus polymyxa strain S3]
MKLRYLILAFIVLAFASVFIGVHDVTPLDLFHLSNDQAQVLLISRFPRLVSIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTIDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLVFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=719359 NWS42_RS09225 WP_263560823.1 1975494..1976447(-) (ceuB) [Paenibacillus polymyxa strain S3]
ATGAAATTGCGCTATTTAATACTGGCTTTTATCGTACTGGCCTTCGCCTCGGTGTTTATCGGTGTGCATGATGTAACTCC
ACTTGATTTGTTCCACTTATCCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGGTCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTCATCATGCAGCAGCTTACTCGGAACCGGTTTGTTTCGCCGACCACCGCA
GGCACGATTGATGCGGCACGATTAGGTGTGCTGATGGCTATTATGGTATTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACCCTGGTTTTCATGAAGATACTGGATAAAATCCGTTTTAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTGACGACTTTTTTTGCTTACAAATACAATCTGATT
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATTATGAGTGGTCGCTACGAAATGCTGTATCTCAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCTAATTTAGGCG
TACATTACAAGCGCACTGTCAATGTTGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTCATCTTAACCGTTGGGACG
ATTCCCTTTTTAGGACTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAATCTGAAAAAAAGCCTAGCACATAC
AGCGATCTTGGGCGCCGTTTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAAATTTCGGTAG
GGCTAACGGTTGGTGTGATCGGAAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.841

99.369

0.495