Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PT256_RS14695 Genome accession   NZ_CP117817
Coordinates   3229973..3230566 (+) Length   197 a.a.
NCBI ID   WP_011216607.1    Uniprot ID   Q5WT52
Organism   Legionella pneumophila strain D5573     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3224973..3235566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT256_RS14685 (PT256_14685) dnaX 3227922..3229592 (+) 1671 WP_061636765.1 DNA polymerase III subunit gamma/tau -
  PT256_RS14690 (PT256_14690) - 3229626..3229964 (+) 339 WP_011216606.1 YbaB/EbfC family nucleoid-associated protein -
  PT256_RS14695 (PT256_14695) recR 3229973..3230566 (+) 594 WP_011216607.1 recombination mediator RecR Machinery gene
  PT256_RS14700 (PT256_14700) - 3230559..3231419 (+) 861 WP_015961790.1 DUF547 domain-containing protein -
  PT256_RS14705 (PT256_14705) - 3231416..3233413 (+) 1998 WP_061784483.1 sulfatase-like hydrolase/transferase -
  PT256_RS14710 (PT256_14710) - 3233661..3235139 (-) 1479 WP_061784484.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21705.01 Da        Isoelectric Point: 6.6782

>NTDB_id=719346 PT256_RS14695 WP_011216607.1 3229973..3230566(+) (recR) [Legionella pneumophila strain D5573]
MDALSRLVEALRCLPGVGPKSAQRMVFHLLQHQRQRGLHLASCLEQAMKHISHCQQCNNYTEQTLCTLCQNPNRDSTLLC
VVESPADVSAIEQSNSFQGKYFVLMGKISPLDGLGPDDIGLPKLKELIIREKIQEVILALSPSVESQTTIHFIHQLLKDE
TVNISQLAHGIPSGGELEFLDGNTISSALKNRAVINV

Nucleotide


Download         Length: 594 bp        

>NTDB_id=719346 PT256_RS14695 WP_011216607.1 3229973..3230566(+) (recR) [Legionella pneumophila strain D5573]
ATGGATGCTCTAAGCCGCTTGGTAGAGGCGCTTCGCTGTCTTCCCGGTGTGGGACCAAAATCAGCACAAAGGATGGTGTT
CCATTTATTGCAGCACCAAAGACAGCGAGGTTTACACCTTGCCTCCTGTTTGGAACAGGCAATGAAGCACATTAGTCATT
GTCAGCAGTGTAATAATTACACCGAACAAACTCTGTGTACTCTTTGCCAAAACCCCAATCGAGATTCAACATTACTTTGC
GTGGTAGAGAGTCCAGCGGATGTTTCTGCCATAGAACAAAGCAATTCCTTTCAAGGTAAATATTTTGTCCTTATGGGAAA
AATTTCTCCTCTTGATGGTTTGGGACCTGATGACATAGGGCTACCGAAACTTAAGGAGTTAATTATTAGGGAAAAAATTC
AGGAAGTTATTCTTGCATTAAGCCCCAGTGTTGAAAGCCAGACCACAATTCATTTTATTCATCAGTTGCTAAAGGATGAA
ACTGTCAATATCAGTCAGTTAGCACATGGAATACCATCAGGTGGTGAATTAGAATTTTTAGATGGGAATACTATAAGCAG
TGCCCTTAAGAACAGAGCAGTGATTAATGTCTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-168)

RecR protein (RecR_ZnF)

(38-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WT52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.513

98.985

0.401
  recR Bacillus subtilis subsp. subtilis str. 168

39.267

96.954

0.381