Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   PT256_RS14585 Genome accession   NZ_CP117817
Coordinates   3205246..3206496 (+) Length   416 a.a.
NCBI ID   WP_061784481.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5573     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3200246..3211496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT256_RS14550 (PT256_14550) - 3200555..3200854 (-) 300 WP_011947628.1 metalloregulator ArsR/SmtB family transcription factor -
  PT256_RS14555 (PT256_14555) - 3201107..3201451 (-) 345 WP_014844809.1 hypothetical protein -
  PT256_RS14560 (PT256_14560) - 3201568..3202197 (+) 630 WP_010948424.1 trimeric intracellular cation channel family protein -
  PT256_RS14565 (PT256_14565) - 3202407..3202901 (-) 495 WP_014844810.1 peptidylprolyl isomerase -
  PT256_RS14570 (PT256_14570) tgt 3202928..3204079 (-) 1152 WP_027225428.1 tRNA guanosine(34) transglycosylase Tgt -
  PT256_RS14575 (PT256_14575) - 3204141..3204632 (-) 492 WP_014844812.1 disulfide bond formation protein B -
  PT256_RS14580 (PT256_14580) - 3204629..3205057 (-) 429 WP_014842763.1 c-type cytochrome -
  PT256_RS14585 (PT256_14585) cqsA 3205246..3206496 (+) 1251 WP_061784481.1 quorum-sensing autoinducer LAI-1 synthase LqsA Regulator
  PT256_RS14590 (PT256_14590) - 3206577..3207602 (-) 1026 WP_010948430.1 response regulator -
  PT256_RS14595 (PT256_14595) - 3207884..3208447 (+) 564 WP_027225430.1 HdeD family acid-resistance protein -
  PT256_RS14600 (PT256_14600) - 3208535..3209824 (-) 1290 WP_010948432.1 HAMP domain-containing sensor histidine kinase -
  PT256_RS14605 (PT256_14605) hemC 3210215..3211144 (+) 930 WP_015961782.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46075.55 Da        Isoelectric Point: 9.0911

>NTDB_id=719345 PT256_RS14585 WP_061784481.1 3205246..3206496(+) (cqsA) [Legionella pneumophila strain D5573]
MSNTEYQTIDNETQYINGKEKHQNHAYPEYINHSMEKYYEGRVNKSWQGKHILKGKTPTANSLIFSSNDYLSISQHPQLI
KAQIAAMQKYGNGQMQSAVFLNNSSFLLSQCEKKFSSFLNYSAALLTQSGWSANVGLIQTLAKYNTPVYLDFYAHMSFWS
GVKAARAKPIPFLHNSVDSLKKRIEHHGPGIIAVDSIYSTLGTISPLADYADIARKFKCLLIVDESHSLGTHGSQGKGMV
AKLGLSSQIDIITASLAKALSGRGGIITGDRQLIEYIRYSSLPSIFSSALMPHDLAGFSASLEIISQEEWRRAKLQTNAD
FLREALSYEGINIGSSGSQIVPLVTGSEANTLWLRDELEKEDLFGAVFCSPATPKNKCLIRLSISANHEKSDLLRVIECL
AKLARKRPDIPLFKGN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=719345 PT256_RS14585 WP_061784481.1 3205246..3206496(+) (cqsA) [Legionella pneumophila strain D5573]
ATGAGCAATACAGAATACCAAACAATTGATAACGAGACTCAATACATCAATGGAAAAGAAAAACATCAAAACCATGCTTA
TCCTGAGTACATCAATCATTCCATGGAAAAATATTACGAGGGGCGAGTCAATAAATCCTGGCAAGGGAAACACATACTTA
AAGGCAAAACCCCGACTGCAAATTCACTGATTTTTTCGAGCAATGATTATTTAAGTATCAGTCAACATCCGCAATTAATT
AAAGCGCAAATTGCTGCGATGCAAAAATATGGTAATGGTCAAATGCAATCCGCTGTATTTTTAAATAACAGCTCTTTTTT
ACTCAGCCAATGTGAAAAGAAATTCAGTTCCTTTTTAAATTATTCTGCGGCCCTGCTCACTCAATCAGGCTGGAGCGCTA
ACGTTGGTCTCATACAAACCCTGGCCAAGTACAATACACCAGTGTATCTGGATTTTTATGCTCATATGTCTTTTTGGTCT
GGAGTAAAAGCAGCAAGAGCCAAACCTATACCTTTTCTACATAATTCAGTCGATTCACTAAAAAAACGAATTGAACACCA
TGGACCAGGAATAATTGCAGTAGATTCTATTTATAGTACGCTGGGTACGATTAGTCCATTGGCTGACTATGCTGACATTG
CAAGAAAATTCAAATGTTTACTCATCGTCGATGAATCTCATTCATTAGGTACGCATGGCTCGCAAGGCAAGGGAATGGTG
GCTAAACTGGGATTATCAAGCCAAATAGACATCATAACAGCAAGCCTGGCTAAAGCCTTATCAGGACGTGGAGGCATCAT
TACAGGAGATAGGCAACTTATAGAATATATCAGATATTCATCTCTGCCTTCTATTTTTAGTTCTGCTTTAATGCCTCATG
ATTTAGCAGGATTTAGCGCATCATTAGAAATTATTAGTCAAGAAGAATGGAGAAGAGCAAAATTACAAACCAATGCTGAT
TTTTTACGAGAAGCCTTATCATACGAAGGAATTAATATAGGAAGTAGTGGCTCTCAAATAGTCCCTTTAGTTACAGGCAG
CGAGGCTAACACGCTTTGGTTAAGGGATGAGTTAGAAAAAGAAGACCTCTTTGGAGCCGTGTTCTGTTCACCCGCCACTC
CCAAAAATAAATGCCTGATTCGTTTATCCATCAGTGCGAATCACGAAAAATCGGACTTGCTCAGAGTGATTGAGTGCCTA
GCCAAACTTGCAAGAAAAAGACCCGATATTCCTTTGTTTAAGGGTAATTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(63-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

45.43

89.423

0.406