Detailed information NTG0719307

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PT256_RS06085
• Genome accession: NZ_CP117817
• Coordinates: 1305599..1306624 (+)
• Length: 341 a.a.
• NCBI ID: WP_011946339.1
• Uniprot ID: -
• Organism: Legionella pneumophila strain D5573
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1300599..1311624

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PT256_RS06055 (PT256_06055)	-	1301031..1301348 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
PT256_RS06060 (PT256_06060)	-	1301384..1301755 (+)	372	WP_011213591.1	protease inhibitor I42 family protein	-
PT256_RS06065 (PT256_06065)	-	1301812..1303527 (-)	1716	WP_061513441.1	NAD-dependent malic enzyme	-
PT256_RS06070 (PT256_06070)	-	1303607..1303990 (+)	384	WP_011946336.1	hypothetical protein	-
PT256_RS06075 (PT256_06075)	surE	1303993..1304751 (+)	759	WP_011946337.1	5'/3'-nucleotidase SurE	-
PT256_RS06080 (PT256_06080)	-	1304770..1305513 (+)	744	WP_011213595.1	peptidoglycan DD-metalloendopeptidase family protein	-
PT256_RS06085 (PT256_06085)	rpoS	1305599..1306624 (+)	1026	WP_011946339.1	RNA polymerase sigma factor RpoS	Regulator
PT256_RS06090 (PT256_06090)	hmgA	1306724..1307974 (-)	1251	WP_011946340.1	homogentisate 1,2-dioxygenase	-
PT256_RS06095 (PT256_06095)	-	1308122..1308865 (+)	744	WP_011946341.1	YebC/PmpR family DNA-binding transcriptional regulator	-
PT256_RS06100 (PT256_06100)	ruvC	1308865..1309389 (+)	525	WP_011946342.1	crossover junction endodeoxyribonuclease RuvC	-
PT256_RS06105 (PT256_06105)	ruvA	1309386..1309985 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
PT256_RS06110 (PT256_06110)	-	1310037..1310357 (+)	321	WP_011946343.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39467.72 Da
• Isoelectric Point: 4.3705

>NTDB_id=719307 PT256_RS06085 WP_011946339.1 1305599..1306624(+) (rpoS) [Legionella pneumophila strain D5573]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEDLDEFPEFTDDEVFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=719307 PT256_RS06085 WP_011946339.1 1305599..1306624(+) (rpoS) [Legionella pneumophila strain D5573]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGATCTTGATGAATTTCCAGAGTTTACTGATGATGAAG
TTTTTCCTTCATTTCAGCGCGGGAAAAACATTGCTAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGCTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTGGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGTCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548