Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   PT258_RS04585 Genome accession   NZ_CP117814
Coordinates   1017851..1019677 (-) Length   608 a.a.
NCBI ID   WP_061721078.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5241     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1012851..1024677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT258_RS04550 (PT258_04550) - 1012880..1014832 (+) 1953 WP_061721077.1 heme lyase CcmF/NrfE family subunit -
  PT258_RS04555 (PT258_04555) - 1014829..1015362 (+) 534 WP_011945972.1 DsbE family thiol:disulfide interchange protein -
  PT258_RS04560 (PT258_04560) - 1015362..1015763 (+) 402 WP_010946599.1 cytochrome c-type biogenesis protein -
  PT258_RS04565 (PT258_04565) - 1015756..1016442 (+) 687 WP_011945973.1 tetratricopeptide repeat protein -
  PT258_RS04570 (PT258_04570) - 1016432..1016635 (+) 204 WP_011213332.1 dodecin -
  PT258_RS04575 (PT258_04575) - 1016691..1017095 (+) 405 WP_010946601.1 DUF4156 domain-containing protein -
  PT258_RS04580 (PT258_04580) - 1017290..1017841 (-) 552 WP_011945974.1 DNA-3-methyladenine glycosylase -
  PT258_RS04585 (PT258_04585) recQ 1017851..1019677 (-) 1827 WP_061721078.1 DNA helicase RecQ Machinery gene
  PT258_RS04590 (PT258_04590) - 1019791..1020945 (+) 1155 WP_027226244.1 acyl-CoA dehydrogenase family protein -
  PT258_RS04595 (PT258_04595) - 1020962..1021738 (+) 777 WP_027226243.1 enoyl-CoA hydratase-related protein -
  PT258_RS04600 (PT258_04600) - 1021741..1022799 (+) 1059 WP_027226242.1 enoyl-CoA hydratase/isomerase family protein -
  PT258_RS04605 (PT258_04605) - 1022965..1023831 (-) 867 WP_011945978.1 Lpg0189 family type II secretion system effector -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 68921.94 Da        Isoelectric Point: 8.1474

>NTDB_id=719233 PT258_RS04585 WP_061721078.1 1017851..1019677(-) (recQ) [Legionella pneumophila strain D5241]
MGTLAQPSFINPNALAVLKKYFGFDSFRPPQEKIIEDVISGEDVLVLMPTGGGKSLCYQIPAIVRRGVGIVVSPLIALME
DQVTALKLQGIRAAYYNSSLTAEEARNVLNQLHHNELDLLYIAPERLISTSFLDRLSECTISLFAIDEAHCISQWGHDFR
PEYACLGLLKTNFPDIPMIALTATADKQTREDIVTKLNYQPKKYVVSFNRPNIHYKVVPKTNAVKQLNLFLQSDTQQSGI
IYCGTRHTVEHLTAKLQELGFKARAYHAGLPHAERREVQNLFRYDRIDIVVATIAFGMGIDKPNVRFVVHHDLPKSIEGY
YQETGRAGRDGLPAKALLLYDAADSARLRSWIMNIPLDEQRHIETNKLNHMLAFAEASHCRRQILLRYFDEPSHTECKNC
DVCDNPPQTADATEDAQKFLSCIYRLKQSYGLTHTIDVLRGSLSEKIKQSGHEHLSTFGIGKEKSANYWKHLAWQLIHKD
YCLQDMNHFNVLRLTPKAIPLLKGEESISLTIPNNDLNSSKKKGKQNPSFKPESNPLFEKLRALRRQLADEENKPPFMIF
SDATLHEMAQSKPKNSKQLLNVSGVGQHKLARYGHYFLEALNEFSEVE

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=719233 PT258_RS04585 WP_061721078.1 1017851..1019677(-) (recQ) [Legionella pneumophila strain D5241]
ATGGGAACTTTAGCGCAACCATCTTTTATAAATCCAAACGCATTGGCTGTTTTAAAAAAATATTTTGGATTTGATTCCTT
CAGGCCTCCTCAGGAAAAAATAATTGAGGATGTCATTTCTGGGGAAGATGTGCTGGTTTTGATGCCTACTGGAGGGGGAA
AATCGCTTTGCTATCAAATTCCAGCCATTGTTCGCCGTGGTGTTGGCATTGTAGTATCTCCTTTAATCGCGTTAATGGAA
GATCAAGTAACCGCTCTCAAACTGCAGGGTATTCGTGCGGCTTACTACAACTCATCCTTAACCGCCGAAGAGGCTAGAAA
TGTATTAAATCAATTACATCATAATGAATTGGATTTACTCTATATTGCTCCAGAACGTCTTATTAGTACCTCGTTTCTGG
ATCGACTGTCAGAATGTACTATCTCTTTATTTGCTATCGATGAAGCACACTGTATTTCACAATGGGGACATGATTTTCGA
CCTGAATACGCCTGTTTAGGTTTACTGAAAACTAACTTTCCTGACATTCCTATGATTGCTCTGACAGCTACTGCCGATAA
GCAAACACGTGAGGATATTGTTACCAAGTTGAATTATCAACCCAAAAAATACGTTGTTTCATTCAATCGACCGAATATCC
ATTACAAAGTAGTTCCTAAAACAAATGCAGTGAAGCAATTAAATCTGTTTTTACAATCTGATACCCAGCAATCCGGAATT
ATTTATTGTGGAACCCGCCATACAGTCGAACATCTTACAGCGAAATTACAAGAACTTGGATTTAAAGCACGCGCTTATCA
TGCAGGCCTGCCTCATGCGGAGCGGCGTGAGGTGCAAAACCTTTTCAGATACGATCGCATTGATATTGTGGTAGCTACTA
TTGCTTTTGGAATGGGTATTGACAAGCCTAATGTTCGCTTTGTTGTTCACCATGATTTACCCAAAAGCATCGAAGGTTAC
TACCAGGAAACAGGTCGTGCAGGGCGTGACGGATTACCGGCCAAGGCCCTTCTTCTTTATGATGCTGCGGATAGTGCCCG
TTTGCGGTCCTGGATCATGAACATTCCTCTTGATGAGCAAAGACATATAGAAACCAATAAATTAAATCATATGCTTGCTT
TTGCTGAAGCGTCGCATTGTCGTCGTCAAATTTTATTACGCTATTTTGATGAACCTTCTCATACAGAATGTAAAAACTGT
GATGTCTGCGATAACCCACCGCAAACAGCCGATGCAACAGAAGATGCGCAAAAATTTTTATCGTGTATTTATCGATTAAA
ACAAAGCTATGGTTTAACTCATACTATTGATGTCCTGAGAGGTAGTTTATCTGAAAAAATCAAGCAGTCTGGGCATGAGC
ATTTAAGTACCTTTGGAATTGGGAAGGAGAAATCTGCCAATTATTGGAAGCATCTTGCCTGGCAATTAATTCATAAAGAT
TATTGTTTACAGGACATGAATCATTTTAATGTGTTACGCTTGACCCCAAAAGCGATTCCCCTCCTAAAAGGTGAAGAGAG
TATTTCATTAACCATTCCTAACAATGACCTGAATAGCAGTAAAAAGAAAGGCAAGCAGAATCCTTCCTTTAAACCTGAAA
GTAACCCATTATTTGAAAAGCTTCGTGCGTTAAGACGTCAGTTAGCCGATGAAGAAAACAAACCACCATTTATGATATTC
AGTGATGCTACATTACATGAAATGGCCCAATCAAAACCCAAAAACAGTAAGCAACTACTGAATGTATCTGGGGTTGGGCA
ACATAAATTAGCTCGTTATGGCCATTATTTTCTCGAAGCCTTAAACGAATTTTCAGAAGTCGAGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(29-189)

RQC domain (RQC)

(406-515)

RecQ zinc-binding (RecQ_Zn_bind)

(343-403)

HRDC domain (HRDC)

(536-601)

Helicase conserved C-terminal domain (Helicase_C)

(231-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.196

98.191

0.385