Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NV394_RS16945 Genome accession   NZ_CP102833
Coordinates   3434756..3435352 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KP4962     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3429756..3440352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV394_RS16930 (NV394_16930) helD 3429964..3432018 (-) 2055 WP_085855787.1 DNA helicase IV -
  NV394_RS16935 (NV394_16935) - 3432143..3432589 (+) 447 WP_002898425.1 YccF domain-containing protein -
  NV394_RS16940 (NV394_16940) yccS 3432607..3434742 (+) 2136 WP_049118083.1 YccS family putative transporter -
  NV394_RS16945 (NV394_16945) sxy/tfoX 3434756..3435352 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  NV394_RS16950 (NV394_16950) sulA 3435701..3436210 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  NV394_RS16955 (NV394_16955) ompA 3436563..3437633 (+) 1071 WP_002898408.1 porin OmpA -
  NV394_RS16960 (NV394_16960) matP 3437765..3438217 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  NV394_RS16965 (NV394_16965) - 3438403..3440160 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=719224 NV394_RS16945 WP_004179217.1 3434756..3435352(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP4962]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=719224 NV394_RS16945 WP_004179217.1 3434756..3435352(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP4962]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGATGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51