Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NVV93_RS16355 Genome accession   NZ_CP102830
Coordinates   3653051..3654412 (-) Length   453 a.a.
NCBI ID   WP_258251697.1    Uniprot ID   -
Organism   Pseudomonas sp. LS44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3648051..3659412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV93_RS16330 (NVV93_16330) - 3649012..3649215 (-) 204 WP_258251692.1 YbdD/YjiX family protein -
  NVV93_RS16335 (NVV93_16335) - 3649287..3651353 (-) 2067 WP_258251693.1 carbon starvation CstA family protein -
  NVV93_RS16340 (NVV93_16340) - 3651512..3652018 (-) 507 WP_258251694.1 DUF3015 domain-containing protein -
  NVV93_RS16345 (NVV93_16345) - 3652142..3652603 (+) 462 WP_258251695.1 isoprenylcysteine carboxylmethyltransferase family protein -
  NVV93_RS16350 (NVV93_16350) - 3652632..3652997 (+) 366 WP_258251696.1 PilZ domain-containing protein -
  NVV93_RS16355 (NVV93_16355) radA 3653051..3654412 (-) 1362 WP_258251697.1 DNA repair protein RadA Machinery gene
  NVV93_RS16360 (NVV93_16360) - 3654463..3654738 (-) 276 WP_258251698.1 hypothetical protein -
  NVV93_RS16365 (NVV93_16365) - 3654826..3655071 (-) 246 WP_258251699.1 YdcH family protein -
  NVV93_RS16370 (NVV93_16370) mscL 3655267..3655668 (+) 402 WP_258251700.1 large-conductance mechanosensitive channel protein MscL -
  NVV93_RS16375 (NVV93_16375) - 3655719..3657284 (-) 1566 WP_258251701.1 TerC family protein -
  NVV93_RS16380 (NVV93_16380) - 3657569..3658345 (-) 777 WP_258251702.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48508.94 Da        Isoelectric Point: 6.6940

>NTDB_id=719155 NVV93_RS16355 WP_258251697.1 3653051..3654412(-) (radA) [Pseudomonas sp. LS44]
MAKAKRVYGCTECGTTFPKWAGQCADCGAWNTLVETIDPGTDAVSARVGWAGQQAQLKTLAEVSVEEMPRFSTASGELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRLPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIEAIIATA
RTEQPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAINELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDTSHLGNP
RRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=719155 NVV93_RS16355 WP_258251697.1 3653051..3654412(-) (radA) [Pseudomonas sp. LS44]
ATGGCCAAGGCCAAGCGCGTCTACGGCTGCACCGAGTGCGGCACGACCTTCCCCAAATGGGCCGGACAATGCGCGGACTG
CGGGGCTTGGAACACCTTGGTGGAAACCATCGATCCCGGCACCGATGCGGTAAGCGCACGGGTTGGCTGGGCTGGCCAGC
AGGCGCAGCTCAAAACCCTGGCCGAAGTCAGCGTCGAAGAAATGCCGCGTTTCTCCACCGCCTCGGGGGAGCTCGACCGT
GTGCTCGGCGGCGGGCTGGTCGACGGTTCGGTGGTCCTGATCGGCGGTGACCCGGGCATTGGCAAGTCGACAATCCTCCT
GCAAACCCTCTGCAATATCGCCACGCGCCTGCCGGCGCTGTACGTCACTGGCGAGGAGTCTCAGCAACAAGTGGCCATGC
GTGCGCGCCGCTTGGGTTTGCCGGAAGACAAACTGAAAGTCATGACCGAGACCTGCATCGAGGCAATCATCGCCACCGCG
CGGACCGAGCAGCCCAAAGTCATGGTCATCGATTCGATCCAGACCATCTTTACCGAACAATTGCAGTCGGCCCCTGGCGG
CGTTTCCCAGGTGCGTGAGAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGTC
ATGTCACTAAAGAGGGCGCGCTGGCTGGTCCGCGCGTGCTCGAGCATATGGTCGACACGGTCCTGTATTTCGAGGGTGAG
TCCGATGGCCGCCTGCGCTTGCTGCGCGCGGTGAAGAACCGTTTCGGCGCGATCAACGAGTTGGGCGTGTTCGGCATGAC
CGATCGCGGTCTCAAAGAAGTCTCCAATCCTTCGGCGATTTTCCTCACCCGCGCTCAGGAGGAGGTGCCCGGCAGCGTGG
TCATGGCCACTTGGGAAGGCACCCGGCCGATGCTCGTGGAAGTGCAGGCGCTGGTCGATACCAGCCATCTGGGCAATCCG
CGTCGCGTCACCTTGGGTCTCGATCAGAACCGTCTGGCCATGCTGCTCGCCGTGCTGCACCGGCATGGCGGCATCCCGAC
CCACGATCAGGATGTGTTTCTCAACGTGGTCGGCGGGGTGAAAGTGCTGGAAACCGCCTCCGATCTGGCGCTGATGGCCG
CGGTCATGTCGAGCCTGCGCAATCGGCCGCTACCGCATGACTTGCTGGTGTTCGGCGAGGTCGGCTTGTCCGGCGAAGTG
CGTCCGGTGCCGAGCGGGCAGGAGCGCTTGAAGGAAGCCGCCAAACACGGCTTCAAGCGCGCCATCGTACCCAAGGGCAA
CGCGCCGAAAGAAGCGCCAGCCGGTCTGCAGGTGATTGCGGTAACGCGCCTGGAGCAGGCGCTGGATGCTTTGTTCGATT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.669

100

0.497
  radA Streptococcus pneumoniae Rx1

47.38

100

0.479
  radA Streptococcus pneumoniae D39

47.38

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.38

100

0.479
  radA Streptococcus pneumoniae R6

47.38

100

0.479
  radA Streptococcus mitis NCTC 12261

47.162

100

0.477
  radA Streptococcus mitis SK321

47.357

100

0.475