Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NV345_RS08760 Genome accession   NZ_CP102827
Coordinates   1855660..1856265 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Indiana strain XZ14C1328     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1850660..1861265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV345_RS08740 - 1851055..1852815 (-) 1761 WP_023227214.1 Lon protease family protein -
  NV345_RS08745 matP 1853001..1853453 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  NV345_RS08750 ompA 1853525..1854577 (-) 1053 WP_001670727.1 porin OmpA -
  NV345_RS08755 sulA 1854934..1855443 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  NV345_RS08760 sxy/tfoX 1855660..1856265 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  NV345_RS08765 yccS 1856252..1858405 (-) 2154 WP_000950876.1 YccS family putative transporter -
  NV345_RS08770 - 1858424..1858870 (-) 447 WP_001261222.1 YccF domain-containing protein -
  NV345_RS08775 helD 1858994..1861048 (+) 2055 WP_023227213.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=719117 NV345_RS08760 WP_001202375.1 1855660..1856265(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Indiana strain XZ14C1328]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=719117 NV345_RS08760 WP_001202375.1 1855660..1856265(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Indiana strain XZ14C1328]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACTGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCGCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAACACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751