Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JG732_RS05630 Genome accession   NZ_AP024205
Coordinates   1146869..1147384 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain TA8571     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1141869..1152384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG732_RS05585 (ECTA8571_11040) csrA 1142456..1142641 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  JG732_RS05615 (ECTA8571_11050) yqaB 1144099..1144665 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  JG732_RS05620 (ECTA8571_11060) yqaA 1144662..1145090 (+) 429 WP_001287454.1 YqaA family protein -
  JG732_RS05625 (ECTA8571_11070) gshA 1145163..1146719 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  JG732_RS05630 (ECTA8571_11080) luxS 1146869..1147384 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  JG732_RS05635 (ECTA8571_11090) emrB 1147448..1148986 (-) 1539 WP_063084630.1 multidrug efflux MFS transporter permease subunit EmrB -
  JG732_RS05640 (ECTA8571_11100) emrA 1149003..1150175 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  JG732_RS05645 (ECTA8571_11110) emrR 1150302..1150832 (-) 531 WP_063084629.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  JG732_RS05650 (ECTA8571_11120) ygaH 1150923..1151258 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  JG732_RS05655 (ECTA8571_11130) ygaZ 1151248..1151985 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=71910 JG732_RS05630 WP_001130211.1 1146869..1147384(+) (luxS) [Escherichia coli strain TA8571]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=71910 JG732_RS05630 WP_001130211.1 1146869..1147384(+) (luxS) [Escherichia coli strain TA8571]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment