Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NV349_RS22470 Genome accession   NZ_CP102798
Coordinates   4565955..4567331 (-) Length   458 a.a.
NCBI ID   WP_036123854.1    Uniprot ID   A0A0W7Y1J7
Organism   Lysinibacillus sp. OF-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4560955..4572331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV349_RS22450 (NV349_22460) gltX 4561580..4563040 (-) 1461 WP_271911892.1 glutamate--tRNA ligase -
  NV349_RS22455 (NV349_22465) ispF 4563131..4563607 (-) 477 WP_089933398.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NV349_RS22460 (NV349_22470) ispD 4563877..4564572 (-) 696 WP_271911893.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NV349_RS22465 (NV349_22475) - 4564584..4565669 (-) 1086 WP_036123784.1 PIN/TRAM domain-containing protein -
  NV349_RS22470 (NV349_22480) radA 4565955..4567331 (-) 1377 WP_036123854.1 DNA repair protein RadA Machinery gene
  NV349_RS22475 (NV349_22485) - 4567423..4569867 (-) 2445 WP_036123786.1 ATP-dependent Clp protease ATP-binding subunit -
  NV349_RS22480 (NV349_22490) - 4569857..4570966 (-) 1110 WP_036123789.1 protein arginine kinase -
  NV349_RS22485 (NV349_22495) - 4570963..4571505 (-) 543 WP_036123855.1 UvrB/UvrC motif-containing protein -
  NV349_RS22490 (NV349_22500) - 4571519..4571989 (-) 471 WP_058845128.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50156.99 Da        Isoelectric Point: 7.3824

>NTDB_id=719093 NV349_RS22470 WP_036123854.1 4565955..4567331(-) (radA) [Lysinibacillus sp. OF-1]
MAKKKTKFVCSGCGYETAKWMGRCPGCGEWNKMVEEVEMVAKGPRGAFQHSATVTQKALPIIQVEATEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVVSQELYIYSETNLEFLNQ
TIDEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPASNIGGWDFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=719093 NV349_RS22470 WP_036123854.1 4565955..4567331(-) (radA) [Lysinibacillus sp. OF-1]
TTGGCAAAGAAAAAAACAAAGTTTGTATGTTCAGGCTGTGGCTATGAAACTGCAAAATGGATGGGAAGATGTCCAGGGTG
TGGAGAATGGAATAAGATGGTGGAAGAAGTTGAGATGGTCGCAAAGGGACCACGAGGAGCATTCCAGCATTCTGCTACAG
TTACCCAAAAGGCTCTCCCAATTATTCAGGTCGAAGCGACTGAAGAATCCCGTGTAGCGACGGAAATGGGCGAACTGAAT
CGCGTATTGGGTGGCGGTATTGTACCCGGTTCGCTCGTATTAATCGGGGGAGATCCGGGGATTGGGAAATCTACACTATT
ACTACAAGTTTCAGCATTACTTTCGAATAAAGGGCATCGTGTGCTTTATATTTCTGGAGAGGAGTCCATTCGTCAAACAA
AATTACGAGCAGAGCGTCTAGGAGTGGTTTCTCAAGAGCTTTACATATATTCCGAGACGAATCTCGAATTTTTAAACCAA
ACCATTGATGAAGTACAACCGAAATTTGTCATTGTCGATTCCATACAAACCGTCTTTCATCCAGAAGTAACAAGTGCACC
AGGTAGTGTATCGCAAGTTCGTGAATGTACGGCAGAACTGATGCGAATCGCCAAGACAAAAGGCATTGCTATTTTCTTGG
TCGGGCATGTAACAAAAGAGGGGCAAATTGCCGGACCTCGTATTTTAGAGCATATGGTTGATACAGTGTTATATTTTGAA
GGAGAAAGACATCATAATCATCGTATTCTACGCAGCCAAAAAAACCGCTTCGGCTCTACCAATGAAATTGCGATATTTGA
AATGCTTCAAGGGGGATTAAAGGAAGTGCTGAATCCTTCTGAATTATTTTTGCAGGAGCGGTCACAAGGAGCAGCGGGAT
CCACTATTGTTGCATCAATGGAGGGGACAAGACCCATCCTTGTTGAAATTCAATCTTTAGTAACACCTACAAGCTTTAAT
TACCCTAAACGTATGGCAACTGGTGTCGATCAAAACCGAGTGCAATTGCTAATGGCAGTGCTAGAAAAACGGATGGGCCT
CATGCTACAAGCTCAGGACGCATATATTAAAGTGGCTGGTGGTGTCAAATTGGATGAGCCAGCAATTGATTTAGCGGTGT
TGACAAGTATTGTCTCAAGCTTTAAAGATCAAGCTGTGCGAGCAACGGACTGCTTTATTGGTGAAGTAGGGCTGACAGGT
GAGGTACGTCGAGTATCACGGATTGAACAGCGTGTTATTGAAGCGGCAAAGCTTGGGTTTAAAAGAGCTTTCATACCTGC
CTCCAATATTGGTGGTTGGGATTTTCCACAGGGAATAGAAATTGTCGGAGTAGAAACGATCAAAGATGCATTAAATGCAT
GCTTTAGAGAGTTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W7Y1J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.705

99.127

0.701
  radA Streptococcus pneumoniae Rx1

61.842

99.563

0.616
  radA Streptococcus pneumoniae D39

61.842

99.563

0.616
  radA Streptococcus pneumoniae R6

61.842

99.563

0.616
  radA Streptococcus pneumoniae TIGR4

61.842

99.563

0.616
  radA Streptococcus mitis NCTC 12261

61.842

99.563

0.616
  radA Streptococcus mitis SK321

61.842

99.563

0.616