Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NV349_RS13740 Genome accession   NZ_CP102798
Coordinates   2834032..2835723 (-) Length   563 a.a.
NCBI ID   WP_058844032.1    Uniprot ID   A0A2I0UVB2
Organism   Lysinibacillus sp. OF-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2829032..2840723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV349_RS13720 (NV349_13720) - 2829282..2830853 (-) 1572 WP_058844034.1 FapA family protein -
  NV349_RS13725 (NV349_13725) - 2831168..2831368 (-) 201 WP_058844033.1 hypothetical protein -
  NV349_RS13730 (NV349_13730) spo0A 2831799..2832590 (-) 792 WP_036122798.1 sporulation transcription factor Spo0A -
  NV349_RS13735 (NV349_13735) - 2832961..2833908 (-) 948 WP_036122795.1 SpoIVB peptidase S55 domain-containing protein -
  NV349_RS13740 (NV349_13740) recN 2834032..2835723 (-) 1692 WP_058844032.1 DNA repair protein RecN Machinery gene
  NV349_RS13745 (NV349_13745) argR 2835757..2836206 (-) 450 WP_004231170.1 transcriptional regulator ArgR -
  NV349_RS13750 (NV349_13750) - 2836307..2837125 (-) 819 WP_271910248.1 TlyA family RNA methyltransferase -
  NV349_RS13755 (NV349_13755) dxs 2837125..2839026 (-) 1902 WP_036122781.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NV349_RS13760 (NV349_13760) - 2839190..2840071 (-) 882 WP_036122780.1 polyprenyl synthetase family protein -
  NV349_RS13765 (NV349_13765) xseB 2840075..2840308 (-) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63281.00 Da        Isoelectric Point: 4.6230

>NTDB_id=719081 NV349_RS13740 WP_058844032.1 2834032..2835723(-) (recN) [Lysinibacillus sp. OF-1]
MLRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSSIHPVLKK
LEEAGIEIEEDTVILRRDLNDSGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQ
KTYSTHYEEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELEEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ESKGLDWIGAAMGALEDAATVDEQFKEASEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQNLKRKYGST
VEEILAYYEKIKTELNELLNRDEILQVKERRVLEMEAVLSDLASELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=719081 NV349_RS13740 WP_058844032.1 2834032..2835723(-) (recN) [Lysinibacillus sp. OF-1]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCTATCATTGAGGATTTGACAGTGAGTTTTTCAGAAGGCTTAACTGTACT
CACAGGGGAAACGGGTGCTGGAAAATCCATTATCATTGATGCTGTGCATTTACTTGCGGGGGGACGAGGCAATACTGAAT
TTATTCGTCATGGCGCAAGAAAGGCAGAATTGGGTGGCTTATTTCAAATTTCGAGTTCCATTCATCCCGTTCTGAAAAAA
TTAGAAGAAGCAGGCATTGAAATAGAAGAAGATACCGTTATTTTACGCCGTGATTTAAATGATTCTGGTAAAAGTATTTG
CCGTGTAAATGGAAAGCTTGTGCCCTTATCCGTTTTAAGAGATATTGGGGCAAGTCTCATTGATATTCATGGTCAACATG
AAAATCAAGAGTTGATGGATGAAAAACAGCATATTAATTTGCTTGACCAGTTTGCAGAGGAAGAGCTGTCACCTATTCAA
AAAACGTATAGTACTCACTATGAGGAATACCGTTTACTCAAAAAAGACTTAGCCTCCATATCCATCGATGAACAATTGAT
GGCACAACGGATTGATTTGTATCAATTCCAAATAAAAGAGCTAGAGGAAGCTAATTTAAAGCTAGGTGAGGAAGACGAGC
TCCTAGATGAACGTCGCCGTCTTATGAACTTCAATAAAATTTTTGAACGCTCTAGTGCAGCTTATGAGGCCATTCAAGGC
GAATCGAAAGGACTCGATTGGATTGGTGCAGCTATGGGCGCGCTAGAAGATGCTGCAACAGTTGACGAACAATTTAAAGA
AGCTTCTGAAGCGGTGACAACTGCGTTTTATGCCTTGCAGGATGCAGCCTATCAGGTCAAAAATGTATTAGATGAATTAG
AATTTGATCCAGCTCGTTTAAATGAGGTTGAGCAACGTTTAGCGTTATTGCAAAATTTAAAGCGCAAATATGGTTCAACA
GTGGAAGAAATTTTAGCGTATTACGAAAAAATTAAAACAGAGTTAAATGAGCTGTTGAATCGTGATGAAATATTGCAAGT
GAAAGAACGACGTGTGTTAGAAATGGAAGCTGTGCTCAGTGATCTGGCGAGTGAACTTTCAACTGTACGTAAAGCTGCCG
CCCAGCAATTAAGTGAAGCAATTATGGCAGAGTTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTCAATTTCGAT
GAATTACCATATTTTGATGCTAACGGGAAAGATCAGATCATTTTCTATATCTCTACAAACGTTGGAGAACCGCCGAAGTC
TTTACCAAAAATTGCATCAGGCGGAGAATTATCGCGCATGATGCTTGCATTAAAAACCATTTTTTCCTCTTCTAATGGCA
TTACATCCATTATTTTTGATGAGGTTGATACGGGTGTCAGTGGCCGTGTGGCGCAAGCCATTGCAGAAAAAATAGCCGCG
ATTTCCGTTAATTCTCAAGTTTTATGTATTTCACATTTACCGCAAGTTGCTGCTATGGCTGATCATCATTACTTTATAAA
AAAAGAAGTGGAGCATGATCGAACATTTACATCTTTATCAGAGATTGATCAAGATGCTCGAATTGAAGAAGTAAGTCGCA
TGATGTCCGGAACAGAAATTACCGCCTTAACATTACAGCATGCAACGGAACTTTTAAAAATGGCGGATGAACGAAAAAAA
CAGATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I0UVB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.86

100

0.542