Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   NWO26_RS09495 Genome accession   NZ_CP102797
Coordinates   1822124..1822567 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST057-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1817124..1827567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS09475 - 1817647..1818399 (-) 753 WP_014727345.1 NUDIX domain-containing protein -
  NWO26_RS09480 - 1818463..1819568 (-) 1106 Protein_1805 AAA family ATPase -
  NWO26_RS09485 gdhA 1819912..1821264 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  NWO26_RS09490 - 1821523..1821933 (+) 411 WP_011680804.1 peptide deformylase -
  NWO26_RS09495 rcrR 1822124..1822567 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  NWO26_RS09500 rcrP 1822571..1824385 (+) 1815 WP_014608025.1 ABC transporter ATP-binding protein Regulator
  NWO26_RS09505 rcrQ 1824375..1826153 (+) 1779 WP_024704205.1 ABC transporter ATP-binding protein Regulator
  NWO26_RS09510 - 1826309..1826566 (+) 258 WP_224107491.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=719055 NWO26_RS09495 WP_002945408.1 1822124..1822567(+) (rcrR) [Streptococcus thermophilus strain ST057-1]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=719055 NWO26_RS09495 WP_002945408.1 1822124..1822567(+) (rcrR) [Streptococcus thermophilus strain ST057-1]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537