Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   NWO26_RS05400 Genome accession   NZ_CP102797
Coordinates   1067397..1068473 (-) Length   358 a.a.
NCBI ID   WP_011681549.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST057-1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1062397..1073473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS05380 - 1063509..1065575 (-) 2067 WP_064355828.1 cation:proton antiporter -
  NWO26_RS05385 - 1065584..1065826 (-) 243 WP_084830769.1 hypothetical protein -
  NWO26_RS05390 - 1065823..1066371 (-) 549 WP_011226462.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  NWO26_RS05395 - 1066368..1067312 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  NWO26_RS05400 sepM 1067397..1068473 (-) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  NWO26_RS05405 coaD 1068451..1068948 (-) 498 WP_014621910.1 pantetheine-phosphate adenylyltransferase -
  NWO26_RS05410 rsmD 1068982..1069521 (-) 540 WP_002951741.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NWO26_RS05415 trxB 1069672..1070592 (-) 921 WP_082309113.1 thioredoxin-disulfide reductase -
  NWO26_RS05420 - 1070658..1070882 (-) 225 WP_082309114.1 DUF4059 family protein -
  NWO26_RS05425 - 1071097..1071840 (-) 744 WP_011681551.1 amino acid ABC transporter ATP-binding protein -
  NWO26_RS05430 - 1071840..1072586 (-) 747 WP_095559509.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39172.02 Da        Isoelectric Point: 9.3888

>NTDB_id=719026 NWO26_RS05400 WP_011681549.1 1067397..1068473(-) (sepM) [Streptococcus thermophilus strain ST057-1]
MANKTKSKALLEKMWRIKWWLLSIFTVLFLLFALFFPLNNYYVELPGGAFDTKEVLTVNKKADDSKGSYNFVAVAQTKAT
LALMLYAQFNDFAKLQTAEEATGNYSDEDFMRINQFYMETSQNQAVYQGLTLAGKEVSLEYMGVYVLQVADDSSFKGVLN
IADTVTAVNGNTFDNSTDMIKYVQGLKLGSKVKVTYMRDGKEKTATGKIIKIANGKNGIGIGLTDHTEIKSPENVKFKLD
GVGGPSAGLMFTLAIYDQVSGQDLKAGRKIAGTGTIEKDGAVGDIGGAYLKVKSAADSGADIFFVPNNLVTKEMKKADPD
AKTNYQEAKEAAEKLGTKMKIVPVKTAQEAIDYLKKTK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=719026 NWO26_RS05400 WP_011681549.1 1067397..1068473(-) (sepM) [Streptococcus thermophilus strain ST057-1]
GTGGCAAACAAGACAAAATCTAAAGCGCTATTAGAGAAAATGTGGCGTATTAAGTGGTGGTTATTAAGTATTTTTACGGT
ACTTTTCCTCCTTTTTGCCCTCTTTTTCCCGCTCAATAATTACTATGTGGAGCTTCCGGGTGGTGCTTTTGATACCAAGG
AAGTCTTGACAGTGAATAAGAAAGCTGATGATTCTAAGGGCTCCTATAATTTTGTGGCGGTGGCTCAAACCAAGGCGACT
TTGGCCTTGATGCTCTATGCTCAGTTTAATGATTTTGCAAAGCTTCAAACGGCTGAAGAGGCAACTGGAAATTACTCTGA
TGAAGATTTCATGCGCATCAACCAATTTTACATGGAGACTTCTCAAAACCAAGCGGTTTATCAGGGCTTGACTCTGGCTG
GTAAGGAGGTTAGTTTGGAGTATATGGGTGTCTATGTGCTTCAGGTTGCTGATGATTCTAGCTTCAAGGGTGTCCTCAAT
ATTGCTGATACGGTGACGGCTGTTAATGGTAATACCTTTGATAATTCTACTGACATGATTAAATACGTTCAAGGACTTAA
GCTGGGTTCAAAGGTCAAGGTCACTTATATGAGAGATGGCAAAGAAAAGACTGCTACTGGTAAGATTATTAAGATTGCCA
ATGGCAAAAATGGTATTGGTATCGGCCTAACGGACCATACTGAGATCAAGAGTCCTGAGAATGTTAAGTTTAAACTGGAT
GGTGTCGGTGGGCCAAGTGCTGGTCTTATGTTTACCTTGGCTATTTACGATCAGGTGTCTGGTCAAGACCTCAAGGCTGG
CCGCAAGATTGCTGGTACAGGAACTATTGAAAAAGATGGGGCTGTCGGTGATATCGGTGGGGCCTATCTCAAGGTGAAAT
CTGCGGCTGATAGTGGCGCAGACATTTTCTTCGTGCCAAATAATCTAGTAACTAAGGAAATGAAAAAGGCTGATCCGGAT
GCCAAGACTAATTATCAAGAGGCCAAGGAAGCTGCCGAGAAACTGGGGACCAAGATGAAAATCGTCCCTGTTAAAACAGC
TCAAGAAGCCATTGATTATTTGAAAAAGACTAAATGA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(137-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

62.757

95.251

0.598