Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   NWO26_RS04385 Genome accession   NZ_CP102797
Coordinates   870289..871215 (-) Length   308 a.a.
NCBI ID   WP_113870320.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST057-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 865289..876215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS04355 - 865366..866160 (-) 795 WP_113870322.1 HAD-IIB family hydrolase -
  NWO26_RS04360 - 866345..866722 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  NWO26_RS04365 - 866727..867425 (+) 699 WP_113870321.1 ABC transporter ATP-binding protein -
  NWO26_RS04370 - 867437..868222 (+) 786 WP_011681414.1 hypothetical protein -
  NWO26_RS04375 amiF 868272..869201 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  NWO26_RS04380 amiE 869194..870279 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  NWO26_RS04385 amiD 870289..871215 (-) 927 WP_113870320.1 oligopeptide ABC transporter permease OppC Regulator
  NWO26_RS04390 amiC 871215..872708 (-) 1494 WP_014608541.1 ABC transporter permease Regulator
  NWO26_RS04395 amiA 872770..874737 (-) 1968 WP_014621802.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34708.88 Da        Isoelectric Point: 9.7054

>NTDB_id=719018 NWO26_RS04385 WP_113870320.1 870289..871215(-) (amiD) [Streptococcus thermophilus strain ST057-1]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIIGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=719018 NWO26_RS04385 WP_113870320.1 870289..871215(-) (amiD) [Streptococcus thermophilus strain ST057-1]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTA
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

99.675

100

0.997
  amiD Streptococcus thermophilus LMD-9

99.675

100

0.997
  amiD Streptococcus salivarius strain HSISS4

96.104

100

0.961