Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PTC92_RS01470 Genome accession   NZ_CP117759
Coordinates   312731..313258 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   A0ABX6CJU3
Organism   Acinetobacter baumannii strain 2022CK-00843     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307731..318258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC92_RS01455 (PTC92_01455) pilM 310284..311342 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  PTC92_RS01460 (PTC92_01460) pilN 311342..311983 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  PTC92_RS01465 (PTC92_01465) pilO 311980..312720 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  PTC92_RS01470 (PTC92_01470) pilP 312731..313258 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  PTC92_RS01475 (PTC92_01475) pilQ 313326..315491 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  PTC92_RS01480 (PTC92_01480) aroK 315503..316072 (+) 570 WP_000643712.1 shikimate kinase AroK -
  PTC92_RS01485 (PTC92_01485) aroB 316101..317183 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  PTC92_RS01490 (PTC92_01490) - 317199..318074 (+) 876 WP_000218802.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=719003 PTC92_RS01470 WP_000695065.1 312731..313258(+) (pilP) [Acinetobacter baumannii strain 2022CK-00843]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=719003 PTC92_RS01470 WP_000695065.1 312731..313258(+) (pilP) [Acinetobacter baumannii strain 2022CK-00843]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL/pilP Acinetobacter baylyi ADP1

71.839

99.429

0.714