Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NTU39_RS12045 Genome accession   NZ_CP102780
Coordinates   2586636..2588009 (+) Length   457 a.a.
NCBI ID   WP_039398772.1    Uniprot ID   A0A5E4YTV1
Organism   Pandoraea commovens strain LB-19-202-79     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2581636..2593009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTU39_RS12025 (NTU39_12025) - 2581940..2583040 (+) 1101 WP_257959891.1 DUF1853 family protein -
  NTU39_RS12030 (NTU39_12030) thiD 2583068..2583910 (-) 843 WP_150666384.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NTU39_RS12035 (NTU39_12035) lplT 2583912..2585204 (-) 1293 WP_150666385.1 lysophospholipid transporter LplT -
  NTU39_RS12040 (NTU39_12040) alr 2585543..2586613 (+) 1071 WP_150666386.1 alanine racemase -
  NTU39_RS12045 (NTU39_12045) radA 2586636..2588009 (+) 1374 WP_039398772.1 DNA repair protein RadA Machinery gene
  NTU39_RS12050 (NTU39_12050) - 2588078..2589436 (-) 1359 WP_257959892.1 hypothetical protein -
  NTU39_RS12055 (NTU39_12055) - 2589456..2591396 (-) 1941 WP_257959893.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48193.38 Da        Isoelectric Point: 6.9985

>NTDB_id=718995 NTU39_RS12045 WP_039398772.1 2586636..2588009(+) (radA) [Pandoraea commovens strain LB-19-202-79]
MAKAKTVYICTECGGQTPKWAGQCPNCNGWNTLVESVAEASTGHRYQSLAKSTPIRKLAEIEASDVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRTAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEQAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=718995 NTU39_RS12045 WP_039398772.1 2586636..2588009(+) (radA) [Pandoraea commovens strain LB-19-202-79]
ATGGCTAAAGCCAAGACCGTCTACATCTGTACCGAATGCGGTGGCCAGACCCCCAAGTGGGCTGGCCAGTGTCCCAATTG
CAACGGCTGGAATACGCTCGTCGAATCGGTGGCGGAGGCGTCTACCGGTCATCGCTACCAATCGCTCGCCAAGAGCACGC
CGATTCGCAAGCTGGCGGAAATCGAAGCCTCGGACGTCCCGCGTTTTTCCAGTGGTGTGAGCGAATTCGATCGCGTGCTG
GGCGGTGGCCTGGTCGCGGGCGGTGTGGTGCTGATCGGCGGCGACCCGGGGATCGGCAAGTCGACGCTGCTGCTGCAATC
GCTCGCGCATCTCGCGCGTGAGCGTCGTGCGCTGTATGTGAGCGGCGAAGAGTCCGGCGCGCAGATTGCGTTGCGTGCGC
AGAGGCTCGGTCTTGGCGCGGCGGGCGAGGGCGGTGGCGAACTCGATCTGCTCGCCGAAATCCAGCTTGAGAAGATTCTC
GGTGCGATCGAATCGGAGAAGCCCGACGTCGTCGTCATCGACTCGATTCAGACGATCTATTCCGAAGCGCTGACGTCGGC
CCCGGGATCGGTCGCGCAAGTGCGGGAGTGCGCGGCGCAACTGACGCGCACCGCCAAGCAGAGTGGCGTGACGGTCATCA
TGGTCGGCCACGTGACGAAGGAAGGCAGTCTTGCCGGGCCACGCGTGCTGGAACACATCGTGGACACGGTGCTGTACTTC
GAAGGCGATACGCATTCTTCGTATCGTCTGGTGCGTGCGTTCAAGAACCGCTTCGGCGCTGTGAACGAGCTGGGCGTGTT
TGCAATGACGGAAAAAGGCCTGCGTGGCGTGGCCAATCCGTCGGCGCTATTTCTCTCGCAGCATGAGCAAAGCGTGCCCG
GTTCGTGCGTACTGGTGACGCAGGAGGGCACACGGCCGCTGCTCGTTGAAGTGCAGGCGCTGGTCGATACGGCGCAGGTG
CCGAATCCGCGACGTCTGGCTGTAGGGCTGGAGCAGAACCGTCTGGCGATGTTGCTGGCGGTGATGCACCGTCATGCGGG
TATCGCCTGTTTCGATCAGGATGTGTTTCTGAACGCCGTCGGCGGCGTAAAGATTACCGAACCGGCTGCCGACCTCGCGG
TGTTGCTCGCGATCCATTCGTCGTTGCGCAACAAACCGCTACCGCGCGGCATCGTGGCGTTCGGGGAAGTGGGGCTTGCC
GGGGAAATTCGGCCGAGTCCGCGCGGTCAGGATCGTCTTAAGGAGGCGGCCAAGCTGGGCTTCTCGATTGCGATCATTCC
GAAGGCGAATGCGCCGAAGCAGCCGATCGACGGACTGGAAGTCCACGCCGTTGACCGTCTGGAACAGGCTATCTCGGTCG
TGGCCGGGCTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4YTV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.827

100

0.501
  radA Streptococcus pneumoniae Rx1

49.07

94.092

0.462
  radA Streptococcus pneumoniae D39

49.07

94.092

0.462
  radA Streptococcus pneumoniae R6

49.07

94.092

0.462
  radA Streptococcus pneumoniae TIGR4

49.07

94.092

0.462
  radA Streptococcus mitis SK321

49.07

94.092

0.462
  radA Streptococcus mitis NCTC 12261

49.07

94.092

0.462