Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NTU39_RS03285 Genome accession   NZ_CP102780
Coordinates   623048..624538 (-) Length   496 a.a.
NCBI ID   WP_150665343.1    Uniprot ID   A0A5E4WUQ5
Organism   Pandoraea commovens strain LB-19-202-79     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 618048..629538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTU39_RS03255 (NTU39_03255) mutY 618063..619229 (+) 1167 WP_150665341.1 A/G-specific adenine glycosylase -
  NTU39_RS03260 (NTU39_03260) rapZ 619246..620118 (-) 873 WP_150665342.1 RNase adapter RapZ -
  NTU39_RS03265 (NTU39_03265) - 620286..620618 (-) 333 WP_150661073.1 PsiF family protein -
  NTU39_RS03270 (NTU39_03270) hprK 620803..621768 (-) 966 WP_039395509.1 HPr(Ser) kinase/phosphatase -
  NTU39_RS03275 (NTU39_03275) ptsN 621859..622314 (-) 456 WP_150575389.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NTU39_RS03280 (NTU39_03280) hpf 622550..622906 (-) 357 WP_039395515.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NTU39_RS03285 (NTU39_03285) rpoN/rpoN1 623048..624538 (-) 1491 WP_150665343.1 RNA polymerase factor sigma-54 Machinery gene
  NTU39_RS03290 (NTU39_03290) lptB 624632..625402 (-) 771 WP_150665584.1 LPS export ABC transporter ATP-binding protein -
  NTU39_RS03295 (NTU39_03295) lptA 625428..626126 (-) 699 WP_257959186.1 lipopolysaccharide transport periplasmic protein LptA -
  NTU39_RS03300 (NTU39_03300) lptC 626123..626809 (-) 687 WP_150665345.1 LPS export ABC transporter periplasmic protein LptC -
  NTU39_RS03305 (NTU39_03305) - 626834..627319 (-) 486 WP_246184674.1 HAD family hydrolase -
  NTU39_RS03310 (NTU39_03310) - 627427..628407 (-) 981 WP_039395525.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55214.01 Da        Isoelectric Point: 5.2765

>NTDB_id=718988 NTU39_RS03285 WP_150665343.1 623048..624538(-) (rpoN/rpoN1) [Pandoraea commovens strain LB-19-202-79]
MKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGSVRVGTDGSLRNERSSSSSSSNDN
GHESANGHDEARELDGEARFDDNASDNGSDWSLNDFARSGSASDDDDNARPQLHVDHPNLREHLLAQLRLTKASPRDRAL
VEFLIESLDEDGYLGSLLDEIQAEMPEELALETEEINAALALLQSFDPAGVGARSPAECLRLQLQRLPASGVRTLSLRIV
TDHLELLAARDYTRLRRLLGVGEDGLRAAHQLIRSLDPFPGSAYGSPQADYVVPDVLVRKQGSGWTAELNPEVMPRLRIN
EMYARILRNNRNDPGTGNLQQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIGMRPLVLREIADTLGLHEST
ISRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQSPLSDSRIAELLAEQGFVVARRTVAK
YREAMRIPAVNLRKSL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=718988 NTU39_RS03285 WP_150665343.1 623048..624538(-) (rpoN/rpoN1) [Pandoraea commovens strain LB-19-202-79]
ATGAAACCGACTCTTCAACTCCGCACCTCGCAGCACCTGACCCTCACGCCGCAGTTGCAGCAATCGATCCGGTTGTTGCA
ACTGTCGACGCTCGAACTCCAACAGGAAGTCGAGCACGCGCTCACCCAGAACCCGATGCTCGAACGCGAGGACGATTGGC
TCGCCGGTTCGGTACGTGTGGGCACAGACGGGTCGCTGCGCAACGAGCGGAGTTCGTCGTCCAGCAGTTCGAACGACAAC
GGCCACGAGTCCGCCAACGGCCACGACGAAGCGCGCGAACTCGATGGCGAGGCCCGCTTCGACGACAACGCGTCGGACAA
TGGCAGCGACTGGAGCCTGAACGACTTCGCCCGCTCCGGCAGCGCATCGGACGACGACGACAATGCGCGTCCGCAACTGC
ATGTCGACCACCCCAATCTCCGCGAACATCTGCTGGCCCAGCTGCGCCTGACCAAGGCGAGTCCGCGCGACCGCGCGCTG
GTGGAATTCCTGATCGAATCGCTGGACGAAGACGGCTACCTCGGTAGCCTGCTCGACGAGATTCAGGCCGAAATGCCCGA
AGAGCTGGCGCTCGAAACGGAAGAAATCAACGCGGCGCTGGCGCTGCTGCAAAGCTTCGATCCGGCGGGCGTGGGTGCCC
GCAGTCCGGCCGAGTGCCTGCGTCTACAGCTCCAGCGACTACCCGCAAGCGGTGTGCGCACCCTGTCGCTGCGCATCGTC
ACCGATCACCTGGAACTGCTGGCCGCGCGCGATTACACGCGTCTGCGCCGCCTGCTGGGTGTCGGCGAAGACGGTCTGCG
CGCCGCGCATCAGCTGATTCGCTCGCTGGACCCCTTCCCGGGCTCGGCTTACGGCTCGCCTCAGGCCGACTACGTCGTGC
CGGACGTGCTGGTACGCAAGCAAGGGAGCGGCTGGACGGCGGAGCTGAATCCGGAAGTGATGCCGCGTCTGCGCATCAAC
GAGATGTATGCGCGCATTCTCCGAAATAACCGGAACGATCCGGGAACCGGCAACCTCCAACAGCAGTTGCAGGAAGCGCG
CTGGCTGATCAAGAACATCCAGCAACGCTTCGACACGATCCTGCGGGTGGCGCAGGCGATTGTCGAGCGTCAAAAGAACT
TCTTCACGCATGGCGAAATCGGCATGCGGCCCTTGGTTTTACGCGAGATTGCTGATACGCTGGGTTTACATGAATCCACG
ATTTCACGGGTGACGACGAGTAAGTACATGCTCACTCCATTTGGAACCTTCGAGCTTAAGTACTTCTTCGGATCACACGT
GGCAACGGAAGCCGGAGGCGCTGCGTCATCGACCGCCATCCGCGCACTCATCAAGCAACTCATAGGAGCTGAAGACCCGC
AGAGCCCCCTTTCCGATAGCCGTATCGCGGAACTGCTGGCAGAGCAAGGTTTTGTGGTGGCGCGGCGCACTGTCGCGAAG
TACCGCGAGGCCATGCGAATCCCCGCAGTGAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(134-323)

Sigma-54, DNA binding domain (Sigma54_DBD)

(339-494)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4WUQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.862

100

0.696