Detailed information NTG0718987

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: NTU39_RS03165
• Genome accession: NZ_CP102780
• Coordinates: 600089..601366 (-)
• Length: 425 a.a.
• NCBI ID: WP_373275389.1
• Uniprot ID: -
• Organism: Pandoraea commovens strain LB-19-202-79
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 595089..606366

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NTU39_RS03140 (NTU39_03140)	rpoH	595816..596754 (-)	939	WP_150664147.1	RNA polymerase sigma factor RpoH	-
NTU39_RS03145 (NTU39_03145)	-	596978..597367 (+)	390	WP_039395446.1	nuclear transport factor 2 family protein	-
NTU39_RS03150 (NTU39_03150)	ybiB	597519..598487 (-)	969	WP_150664148.1	DNA-binding protein YbiB	-
NTU39_RS03155 (NTU39_03155)	maiA	598710..599363 (+)	654	WP_150664149.1	maleylacetoacetate isomerase	-
NTU39_RS03160 (NTU39_03160)	-	599371..599997 (+)	627	WP_150664150.1	LysE/ArgO family amino acid transporter	-
NTU39_RS03165 (NTU39_03165)	pilA	600089..601366 (-)	1278	WP_373275389.1	signal recognition particle-docking protein FtsY	Machinery gene
NTU39_RS03170 (NTU39_03170)	-	601763..603181 (+)	1419	WP_150664152.1	pitrilysin family protein	-
NTU39_RS03175 (NTU39_03175)	-	603196..604635 (+)	1440	WP_257959183.1	pitrilysin family protein	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 44323.86 Da
• Isoelectric Point: 5.4872

>NTDB_id=718987 NTU39_RS03165 WP_373275389.1 600089..601366(-) (pilA) [Pandoraea commovens strain LB-19-202-79]
MPQPSANQPTTPIQSAAPAPVTPSAPAAAPTQAAQPVQPAVSPAENSAHSEPARVNVPTAPTPVAATLTPAPQPTPVAPA
VRSAPVEPVEPVEPVEPVTTPAPVVVKDAQGEAIGEIVSAPAPEPAAKRSWLTRLKAGLSKTSSGITSIFVGVKVDENLF
QELEDALLMSDAGVDATTYLIDALRKKVKAERLTEGEQVKRALHDLLVDLLQPLEQSLVLGREAPMVVMIAGVNGAGKTT
SIGKLAKHFQHYGQSVLLAAGDTFRAAAREQLAIWGERNNVAVVAQESGDPAAVVFDAVSAARARKIDIVMADTAGRLPT
QLHLMEELKKIKRVLGKAADGAPHEVLLVIDANTGQNALTQVKAFDDALQLTGLIVTKLDGTAKGGILAAIARQRPVPVY
FIGVGEKVEDLQPFSAREFADALLG

Nucleotide

• Length: 1278 bp

>NTDB_id=718987 NTU39_RS03165 WP_373275389.1 600089..601366(-) (pilA) [Pandoraea commovens strain LB-19-202-79]
ATGCCGCAACCGTCCGCAAACCAGCCGACGACGCCGATCCAGTCCGCTGCACCGGCACCGGTTACGCCGTCCGCTCCCGC
AGCCGCGCCGACGCAAGCCGCCCAGCCCGTTCAACCTGCCGTCAGCCCTGCCGAAAATTCGGCGCATTCCGAGCCTGCTC
GGGTCAATGTCCCAACGGCGCCAACGCCGGTTGCGGCTACGCTGACGCCTGCCCCGCAGCCGACGCCGGTCGCCCCCGCC
GTTCGGAGCGCGCCCGTCGAACCTGTCGAACCTGTCGAACCTGTTGAACCGGTCACCACGCCCGCTCCTGTCGTCGTGAA
GGATGCGCAGGGCGAAGCCATCGGCGAAATCGTCTCGGCCCCGGCCCCCGAACCGGCGGCCAAGCGTTCGTGGCTCACCC
GTCTGAAGGCCGGGCTGTCCAAGACGAGCTCAGGCATCACGAGCATCTTCGTCGGCGTAAAGGTCGACGAGAACCTGTTC
CAAGAGCTCGAAGACGCCCTCCTGATGAGCGACGCAGGCGTGGACGCCACGACCTATCTGATCGACGCCCTGCGCAAGAA
GGTCAAGGCCGAGCGTCTGACCGAAGGCGAACAGGTCAAGCGCGCGCTGCACGACCTGCTGGTCGACCTGCTGCAACCGC
TCGAACAGAGCCTCGTGCTGGGCCGCGAAGCGCCGATGGTCGTGATGATCGCAGGCGTGAACGGTGCCGGGAAGACGACC
AGCATCGGCAAGCTCGCCAAGCACTTCCAGCACTACGGCCAGTCCGTGCTGCTCGCAGCAGGCGATACGTTCCGCGCAGC
GGCCCGTGAACAACTGGCGATCTGGGGCGAACGCAACAACGTCGCAGTCGTCGCGCAGGAAAGCGGCGACCCGGCAGCCG
TCGTGTTCGACGCCGTGAGCGCCGCACGCGCGCGCAAGATCGACATCGTGATGGCGGACACGGCTGGCCGTCTGCCCACG
CAGTTGCATCTGATGGAAGAGCTCAAGAAGATCAAGCGTGTGCTGGGCAAAGCGGCCGACGGCGCGCCGCACGAGGTGCT
GCTCGTCATCGACGCCAACACCGGCCAGAACGCGCTCACGCAGGTCAAGGCATTCGACGACGCCCTCCAGCTCACCGGTC
TCATCGTGACCAAGCTCGACGGCACGGCCAAGGGCGGCATTCTGGCGGCCATCGCCCGTCAGCGTCCGGTCCCGGTGTAC
TTCATCGGCGTGGGCGAGAAGGTGGAAGACCTGCAACCGTTCTCAGCCCGCGAATTCGCCGACGCCCTGCTGGGGTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (144-205)

• SRP54-type protein, GTPase domain (SRP54) (225-425)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	58.357	83.059	0.485