Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PTC91_RS29080 Genome accession   NZ_CP117749
Coordinates   6142993..6143589 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain 2022CK-00828     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6137993..6148589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC91_RS29060 (PTC91_29060) aroK 6139124..6139642 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PTC91_RS29065 (PTC91_29065) pilQ 6139654..6141798 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  PTC91_RS29070 (PTC91_29070) comL/pilP 6141852..6142376 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PTC91_RS29075 (PTC91_29075) pilO 6142373..6142996 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PTC91_RS29080 (PTC91_29080) pilN 6142993..6143589 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PTC91_RS29085 (PTC91_29085) pilM 6143589..6144653 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PTC91_RS29090 (PTC91_29090) - 6144838..6147309 (+) 2472 WP_019484455.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=718977 PTC91_RS29080 WP_003095839.1 6142993..6143589(-) (pilN) [Pseudomonas aeruginosa strain 2022CK-00828]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=718977 PTC91_RS29080 WP_003095839.1 6142993..6143589(-) (pilN) [Pseudomonas aeruginosa strain 2022CK-00828]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369