Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PTC91_RS29070 Genome accession   NZ_CP117749
Coordinates   6141852..6142376 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 2022CK-00828     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6136852..6147376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC91_RS29055 (PTC91_29055) aroB 6137968..6139074 (-) 1107 WP_019484454.1 3-dehydroquinate synthase -
  PTC91_RS29060 (PTC91_29060) aroK 6139124..6139642 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PTC91_RS29065 (PTC91_29065) pilQ 6139654..6141798 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  PTC91_RS29070 (PTC91_29070) comL/pilP 6141852..6142376 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PTC91_RS29075 (PTC91_29075) pilO 6142373..6142996 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PTC91_RS29080 (PTC91_29080) pilN 6142993..6143589 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PTC91_RS29085 (PTC91_29085) pilM 6143589..6144653 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PTC91_RS29090 (PTC91_29090) - 6144838..6147309 (+) 2472 WP_019484455.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=718975 PTC91_RS29070 WP_003095836.1 6141852..6142376(-) (comL/pilP) [Pseudomonas aeruginosa strain 2022CK-00828]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=718975 PTC91_RS29070 WP_003095836.1 6141852..6142376(-) (comL/pilP) [Pseudomonas aeruginosa strain 2022CK-00828]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362