Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NVS55_RS06565 Genome accession   NZ_CP102770
Coordinates   1599239..1600600 (-) Length   453 a.a.
NCBI ID   WP_342379067.1    Uniprot ID   -
Organism   Myxococcus stipitatus strain YRE12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1594239..1605600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVS55_RS06535 (NVS55_06550) - 1595200..1595811 (-) 612 WP_342379059.1 ABATE domain-containing protein -
  NVS55_RS06540 (NVS55_06555) - 1595940..1596617 (-) 678 WP_342379061.1 hemolysin III family protein -
  NVS55_RS06545 (NVS55_06560) - 1596925..1597614 (+) 690 WP_342379062.1 STAS domain-containing protein -
  NVS55_RS06550 (NVS55_06565) - 1597620..1598216 (+) 597 WP_342379064.1 hypothetical protein -
  NVS55_RS06555 (NVS55_06570) - 1598280..1598690 (-) 411 WP_342379065.1 DoxX family protein -
  NVS55_RS06560 (NVS55_06575) - 1598801..1599223 (+) 423 WP_342379066.1 helix-turn-helix domain-containing protein -
  NVS55_RS06565 (NVS55_06580) radA 1599239..1600600 (-) 1362 WP_342379067.1 DNA repair protein RadA Machinery gene
  NVS55_RS06570 (NVS55_06585) bioB 1600822..1601856 (+) 1035 WP_342379068.1 biotin synthase BioB -
  NVS55_RS06575 (NVS55_06590) bioF 1601912..1603078 (+) 1167 WP_342381885.1 8-amino-7-oxononanoate synthase -
  NVS55_RS06580 (NVS55_06595) bioD 1603382..1604059 (+) 678 WP_342379069.1 dethiobiotin synthase -
  NVS55_RS06585 (NVS55_06600) - 1604192..1604470 (+) 279 WP_015346893.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47940.29 Da        Isoelectric Point: 7.9308

>NTDB_id=718962 NVS55_RS06565 WP_342379067.1 1599239..1600600(-) (radA) [Myxococcus stipitatus strain YRE12]
MAKAKTHYTCQACGYQTAKWLGKCPDCGAWSSLLEEAGAKDDEKRPAWGASGGAAKPMLLKEVSGESEVRRRTGIAEFDR
VLGGGVVSGSVVLLGGDPGIGKSTLLLAALDKLARHGAVLYVSGEESLRQTKMRAERLRVDGANIHLFAETDAERVLGAA
ESLKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRTGVPTFIVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVADPSALFLSERPVGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLNEPACDLAVCAALVSSLQNRPLDPHTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVMPAGSARRMEATKLRVVGVETLGDALRAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=718962 NVS55_RS06565 WP_342379067.1 1599239..1600600(-) (radA) [Myxococcus stipitatus strain YRE12]
ATGGCGAAGGCGAAGACGCACTACACCTGCCAGGCGTGCGGGTATCAGACGGCGAAGTGGCTGGGGAAGTGCCCGGATTG
CGGCGCGTGGAGCTCGTTGCTGGAGGAGGCGGGGGCCAAGGACGACGAGAAGCGCCCCGCGTGGGGGGCCTCGGGGGGCG
CGGCGAAGCCCATGCTCCTCAAGGAGGTCAGCGGAGAGTCGGAGGTGCGCCGCCGCACGGGCATCGCCGAGTTCGACCGC
GTCCTCGGCGGGGGCGTGGTGAGCGGCTCCGTCGTCCTCCTGGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
CGCGGCGCTCGACAAGCTCGCCCGCCACGGCGCCGTGCTCTACGTCTCCGGTGAAGAGAGCCTGCGCCAGACGAAGATGC
GCGCGGAGCGCCTGCGTGTGGACGGAGCGAACATCCACCTCTTCGCGGAGACGGACGCGGAGCGGGTGCTGGGCGCCGCC
GAGTCGCTCAAGCCGCAGGCGCTCGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTGGCCGGCCGGCTCATGGCCTACGCCAAGCGCACGGGAGTTCCCACCTTCATCGTGGGCC
ACGTGACGAAGGAAGGCTCCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTGGACACCGTCCTCTACTTCGAGGGCGAG
CGCGGCCACCCCTTCCGCATCCTGCGCGCGCACAAGAACCGCTTCGGCTCCACCAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGCCTCGTCGAGGTCGCGGACCCCTCCGCGCTGTTCCTGTCCGAGCGCCCCGTGGGCAAGTCCGGCAGCGTCG
TCACCAGCACCCTCAACGGCACGCGCCCGCTGCTCGTGGAGGTCCAGGCGCTGGTGGCCCCCACGGGCTACGGCACCGCG
CGGCGCACGGCCATCGGCGTGGACGGCAACCGCGTGGCGCTGCTCGCCGCGGTCCTGGAGAAGAAGGAGGAGATTCCGCT
GGTGGGCTGCGACTTGTTCGTCAACGTCGCGGGCGGCATGCAGCTCAACGAGCCCGCCTGTGATTTGGCCGTGTGCGCGG
CGCTGGTGAGCAGCCTCCAGAACCGCCCGCTGGACCCGCACACGCTGGTGCTGGGCGAGGTGGGCCTCGCCGGCGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCCCGCCTCGCCGAGGCCGCGAAGATGGGATTCCAGCGCGTGGTGATGCCCGCGGGCAG
CGCCCGGCGCATGGAGGCGACGAAGCTGCGCGTGGTGGGCGTGGAGACCCTGGGCGACGCCCTGCGGGCCATGTTCGACT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-219)

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.98

100

0.53
  radA Streptococcus pneumoniae Rx1

52.318

100

0.523
  radA Streptococcus pneumoniae D39

52.318

100

0.523
  radA Streptococcus pneumoniae R6

52.318

100

0.523
  radA Streptococcus pneumoniae TIGR4

52.318

100

0.523
  radA Streptococcus mitis NCTC 12261

52.318

100

0.523
  radA Streptococcus mitis SK321

52.097

100

0.521