Detailed information NTG0718912

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PTC91_RS06855
• Genome accession: NZ_CP117749
• Coordinates: 1467036..1468040 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2022CK-00828
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1462036..1473040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PTC91_RS06825 (PTC91_06825)	fghA	1462128..1462979 (+)	852	WP_019484567.1	S-formylglutathione hydrolase	-
PTC91_RS06830 (PTC91_06830)	ispF	1463050..1463523 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PTC91_RS06835 (PTC91_06835)	truD	1463520..1464587 (+)	1068	WP_019484568.1	tRNA pseudouridine(13) synthase TruD	-
PTC91_RS06840 (PTC91_06840)	surE	1464575..1465324 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PTC91_RS06845 (PTC91_06845)	-	1465357..1465992 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PTC91_RS06850 (PTC91_06850)	-	1466038..1466931 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
PTC91_RS06855 (PTC91_06855)	rpoS	1467036..1468040 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PTC91_RS06860 (PTC91_06860)	fdxA	1468467..1468790 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PTC91_RS06865 (PTC91_06865)	mutS	1468857..1471436 (-)	2580	WP_003105609.1	DNA mismatch repair protein MutS	-
PTC91_RS06870 (PTC91_06870)	-	1471496..1472470 (-)	975	WP_023117116.1	tyrosine-type recombinase/integrase	-
PTC91_RS06880 (PTC91_06880)	-	1472770..1472892 (-)	123	WP_258167426.1	hypothetical protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=718912 PTC91_RS06855 WP_003113871.1 1467036..1468040(+) (rpoS) [Pseudomonas aeruginosa strain 2022CK-00828]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=718912 PTC91_RS06855 WP_003113871.1 1467036..1468040(+) (rpoS) [Pseudomonas aeruginosa strain 2022CK-00828]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653