Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NU955_RS15985 Genome accession   NZ_CP102762
Coordinates   3367513..3368148 (+) Length   211 a.a.
NCBI ID   WP_000472265.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AOR07-BL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3362513..3373148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NU955_RS15970 adeT2 3363573..3364559 (-) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  NU955_RS15975 - 3364639..3365454 (-) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  NU955_RS15980 recG 3365475..3367520 (+) 2046 WP_030423568.1 ATP-dependent DNA helicase RecG -
  NU955_RS15985 comF 3367513..3368148 (+) 636 WP_000472265.1 ComF family protein Machinery gene
  NU955_RS15990 - 3368151..3368552 (-) 402 WP_000849701.1 NUDIX hydrolase -
  NU955_RS15995 - 3368567..3369148 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  NU955_RS16000 - 3369306..3370319 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  NU955_RS16005 - 3370389..3370676 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  NU955_RS16010 - 3370688..3371329 (-) 642 WP_269440915.1 phospholipid-binding protein MlaC -
  NU955_RS16015 - 3371356..3372036 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  NU955_RS16020 mlaE 3372036..3372812 (-) 777 WP_269440916.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24584.74 Da        Isoelectric Point: 9.7140

>NTDB_id=718861 NU955_RS15985 WP_000472265.1 3367513..3368148(+) (comF) [Acinetobacter baumannii strain AOR07-BL]
MFKFLNPQYLFHLLSPCLLCEIGTREKYPLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=718861 NU955_RS15985 WP_000472265.1 3367513..3368148(+) (comF) [Acinetobacter baumannii strain AOR07-BL]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATCCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGACCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981