Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NWA04_RS09540 Genome accession   NZ_CP102756
Coordinates   2006276..2006881 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Kentucky isolate AH19MCS11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2001276..2011881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWA04_RS09520 - 2001671..2003431 (-) 1761 WP_000156448.1 Lon protease family protein -
  NWA04_RS09525 matP 2003617..2004069 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  NWA04_RS09530 ompA 2004141..2005193 (-) 1053 WP_001670727.1 porin OmpA -
  NWA04_RS09535 sulA 2005550..2006059 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  NWA04_RS09540 sxy/tfoX 2006276..2006881 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  NWA04_RS09545 yccS 2006868..2009021 (-) 2154 WP_000950881.1 YccS family putative transporter -
  NWA04_RS09550 - 2009040..2009486 (-) 447 WP_001261222.1 YccF domain-containing protein -
  NWA04_RS09555 helD 2009610..2011664 (+) 2055 WP_023228225.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=718816 NWA04_RS09540 WP_001202375.1 2006276..2006881(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Kentucky isolate AH19MCS11]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=718816 NWA04_RS09540 WP_001202375.1 2006276..2006881(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Kentucky isolate AH19MCS11]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751