Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NV347_RS19120 Genome accession   NZ_CP102749
Coordinates   4251681..4253063 (+) Length   460 a.a.
NCBI ID   WP_039481782.1    Uniprot ID   A0AAQ0WY40
Organism   Pectobacterium parvum strain YT22221     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4246681..4258063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV347_RS19100 (NV347_19100) osmY 4246906..4247514 (-) 609 WP_039481770.1 molecular chaperone OsmY -
  NV347_RS19105 (NV347_19105) prfC 4248038..4249627 (-) 1590 WP_039481772.1 peptide chain release factor 3 -
  NV347_RS19110 (NV347_19110) - 4249834..4250529 (-) 696 WP_039481775.1 YtjB family periplasmic protein -
  NV347_RS19115 (NV347_19115) serB 4250686..4251663 (+) 978 WP_039481779.1 phosphoserine phosphatase -
  NV347_RS19120 (NV347_19120) radA 4251681..4253063 (+) 1383 WP_039481782.1 DNA repair protein RadA Machinery gene
  NV347_RS19125 (NV347_19125) nadR 4253183..4254436 (+) 1254 WP_039481785.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  NV347_RS19130 (NV347_19130) - 4254433..4255080 (-) 648 WP_039481787.1 5-formyltetrahydrofolate cyclo-ligase -
  NV347_RS19140 (NV347_19140) zapA 4255378..4255707 (-) 330 WP_010284667.1 cell division protein ZapA -
  NV347_RS19145 (NV347_19145) - 4255894..4256481 (+) 588 WP_039481789.1 YecA family protein -
  NV347_RS19150 (NV347_19150) pepP 4256539..4257864 (+) 1326 WP_039481790.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49563.13 Da        Isoelectric Point: 7.4218

>NTDB_id=718797 NV347_RS19120 WP_039481782.1 4251681..4253063(+) (radA) [Pectobacterium parvum strain YT22221]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=718797 NV347_RS19120 WP_039481782.1 4251681..4253063(+) (radA) [Pectobacterium parvum strain YT22221]
GTGGCAAAAGCCGTCAAACGGGCATTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAGTGCAGTGC
CTGCCATGCCTGGAACACCATTACCGAAGTCCGCCTGGCCTCGGCGTCAGTATCACGTTCCGACCGTCTCACCGGCTATG
CGGGCGAAAGCGCTGGCGTCAGCCGGGTACAGAAGCTCTCGGAAATCAGTCTTGAAGCTCTGCCGCGATTTTCTACCGGC
TTTCAGGAGTTTGATCGCGTTCTGGGCGGCGGCGTCGTTCCCGGCAGCGCCATTCTGATCGGCGGTAGCCCCGGCGCGGG
TAAAAGTACCCTACTGTTGCAAACGCTCTGCAAGCTGTCAGAAAACATGAAAACCCTGTACGTCACCGGCGAAGAATCGT
TGCAGCAGGTGGCAATGCGGGCACACCGCCTCAATCTGCCGACTCAGAATCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAACAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTGACCCGCTTCGCTAAAACGCGCGGCGTTG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCAAAAGTATTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGACGGCGATGCCGATTCCCGCTTCCGTACCCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAACT
GGGCGTATTCGCAATGACGGAACAGGGGCTACGCGAGATCAGCAATCCGTCGGCAATTTTCCTCAGCCGTGGGGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGTACGCGTCCGCTGCTGGTCGAGATTCAGGCGCTAGTGGATCAG
TCGATGATGGCCAACCCGCGTCGCGTCGCGGTCGGGCTGGAGCAAAACCGCTTGGCGATCCTGCTGGCAGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTGTTCGTGAATGTTGTCGGCGGCGTTAAAGTCACCGAAACCAGTGCCG
ACCTGGCGCTGCTGCTATCGCTGGTCTCCAGCTTCCGCGACCGCCCGCTGCCGCAGGATCTTGTCATCTTCGGTGAAGTC
GGTCTGGCGGGAGAAATCCGCCCGGTTCCAAGCGGACAAGAACGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGCATGCAAGTGTTCGGTGTGAAAAAGCTAGCCGACGCGC
TGGCAATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426