Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PTA75_RS14715 Genome accession   NZ_CP117720
Coordinates   2993819..2994448 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain B1W1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2988819..2999448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTA75_RS14700 (PTA75_14700) helD 2989061..2991115 (-) 2055 WP_000420536.1 DNA helicase IV -
  PTA75_RS14705 (PTA75_14705) yccF 2991238..2991684 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PTA75_RS14710 (PTA75_14710) yccS 2991694..2993856 (+) 2163 WP_000875023.1 YccS family putative transporter -
  PTA75_RS14715 (PTA75_14715) sxy/tfoX 2993819..2994448 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PTA75_RS14720 (PTA75_14720) sulA 2994667..2995176 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PTA75_RS14725 (PTA75_14725) ompA 2995533..2996585 (+) 1053 WP_001361736.1 porin OmpA -
  PTA75_RS14730 (PTA75_14730) matP 2996661..2997113 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PTA75_RS14735 (PTA75_14735) ycbZ 2997299..2999059 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=718786 PTA75_RS14715 WP_000839153.1 2993819..2994448(-) (sxy/tfoX) [Escherichia coli strain B1W1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=718786 PTA75_RS14715 WP_000839153.1 2993819..2994448(-) (sxy/tfoX) [Escherichia coli strain B1W1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1