Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   NWE22_RS08795 Genome accession   NZ_CP102747
Coordinates   1727971..1728705 (-) Length   244 a.a.
NCBI ID   WP_274505364.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722971..1733705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS08770 (NWE22_08770) - 1723910..1724764 (-) 855 WP_174846640.1 helix-turn-helix domain-containing protein -
  NWE22_RS08775 (NWE22_08775) rpmB 1725064..1725252 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  NWE22_RS08780 (NWE22_08780) trmB 1725455..1726093 (-) 639 WP_171989646.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NWE22_RS08785 (NWE22_08785) - 1726090..1726884 (-) 795 WP_105127234.1 phosphotransferase family protein -
  NWE22_RS08790 (NWE22_08790) - 1726934..1727974 (-) 1041 WP_277745414.1 ABC transporter permease -
  NWE22_RS08795 (NWE22_08795) pptA 1727971..1728705 (-) 735 WP_274505364.1 ABC transporter ATP-binding protein Regulator
  NWE22_RS08800 (NWE22_08800) - 1728768..1729181 (+) 414 WP_171989648.1 HIT family protein -
  NWE22_RS08805 (NWE22_08805) - 1729183..1729488 (+) 306 WP_174846644.1 chemotaxis protein -
  NWE22_RS08810 (NWE22_08810) - 1729627..1730802 (-) 1176 WP_174846645.1 LCP family protein -
  NWE22_RS08815 (NWE22_08815) - 1730799..1731326 (-) 528 WP_216806403.1 GNAT family N-acetyltransferase -
  NWE22_RS08820 (NWE22_08820) tsaE 1731319..1731759 (-) 441 WP_277745749.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  NWE22_RS08825 (NWE22_08825) - 1731865..1733529 (-) 1665 WP_277745415.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27136.53 Da        Isoelectric Point: 4.6870

>NTDB_id=718711 NWE22_RS08795 WP_274505364.1 1727971..1728705(-) (pptA) [Streptococcus parasuis strain SFJ45]
MLEVKNITGGYINIPVVKDVSFTVESGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGEILIDGKSLVQDAENYRKKIGFIP
ETPSLYEELTLKEHLEVVALAYDLTWDQAWSRVQGLLTIFRLDEKLDWFPVHFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLVNLLEEEKAKKTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQHAFNMKGASLNEIYLALTQE
GVAR

Nucleotide


Download         Length: 735 bp        

>NTDB_id=718711 NWE22_RS08795 WP_274505364.1 1727971..1728705(-) (pptA) [Streptococcus parasuis strain SFJ45]
ATGTTAGAAGTAAAAAATATAACAGGAGGCTACATCAATATTCCCGTAGTGAAAGATGTATCTTTCACTGTTGAGAGCGG
TCAGTTAGTTGGCTTAATTGGATTGAATGGTGCAGGGAAATCAACGACGATAAAGGAAATTATTGGCCTTTTGACTCCTT
ATCAAGGAGAAATTTTAATTGATGGGAAAAGTCTTGTACAGGATGCAGAGAATTATCGGAAGAAAATTGGATTTATCCCT
GAAACACCTAGCTTGTATGAGGAATTGACGCTTAAGGAACATTTAGAGGTAGTAGCTTTAGCCTATGATTTGACTTGGGA
TCAAGCCTGGAGTCGAGTTCAGGGGTTGTTAACGATTTTTCGGTTGGATGAAAAATTGGACTGGTTCCCTGTTCATTTTT
CTAAGGGAATGAAACAGAAAGTTATGATTATCTGTGCTTTCATGGTGGAACCGAGTTTGTTGATTGTTGACGAGCCGTTT
TTAGGGCTGGATCCTGTAGCGATTTCGGACTTAGTAAACCTATTAGAAGAGGAGAAAGCTAAAAAAACTTCAATTCTGAT
GTCTACTCATGTTCTTGACTCGGCCGAGAAAATGTGTGATTCTTTTGTTATCTTACATCAAGGTCAGGTTCGTGCAACAG
GGAATTTAGAGGAATTGCAACATGCCTTTAACATGAAAGGTGCAAGTCTCAACGAAATTTATCTGGCGTTGACACAAGAA
GGAGTGGCCAGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

70.293

97.951

0.689
  pptA Streptococcus thermophilus LMD-9

69.038

97.951

0.676