Detailed information NTG0718680

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: NWE22_RS01040
• Genome accession: NZ_CP102747
• Coordinates: 190619..193072 (+)
• Length: 817 a.a.
• NCBI ID: WP_239604461.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain SFJ45
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 185619..198072

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NWE22_RS01015 (NWE22_01015)	-	186357..187340 (+)	984	WP_216806175.1	DUF4767 domain-containing protein	-
NWE22_RS01020 (NWE22_01020)	rpsB	187540..188316 (+)	777	WP_171989595.1	30S ribosomal protein S2	-
NWE22_RS01025 (NWE22_01025)	tsf	188472..189512 (+)	1041	WP_174846563.1	translation elongation factor Ts	-
NWE22_RS01030 (NWE22_01030)	-	189673..190011 (-)	339	WP_174846564.1	thioredoxin domain-containing protein	-
NWE22_RS01035 (NWE22_01035)	-	190155..190613 (+)	459	WP_277745517.1	CtsR family transcriptional regulator	-
NWE22_RS01040 (NWE22_01040)	clpC	190619..193072 (+)	2454	WP_239604461.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
NWE22_RS01045 (NWE22_01045)	-	193201..194238 (+)	1038	WP_239604463.1	AAA family ATPase	-
NWE22_RS01050 (NWE22_01050)	pnuC	194278..195063 (+)	786	WP_277745733.1	nicotinamide riboside transporter PnuC	-
NWE22_RS01055 (NWE22_01055)	-	195056..195838 (+)	783	WP_277745518.1	NUDIX domain-containing protein	-
NWE22_RS01060 (NWE22_01060)	dusB	195872..196876 (-)	1005	WP_172036533.1	tRNA dihydrouridine synthase DusB	-
NWE22_RS01065 (NWE22_01065)	hslO	196869..197735 (-)	867	WP_277745519.1	Hsp33 family molecular chaperone HslO	-

Sequence

Protein

• Length: 817 a.a.
• Molecular weight: 90572.99 Da
• Isoelectric Point: 5.6799

>NTDB_id=718680 NWE22_RS01040 WP_239604461.1 190619..193072(+) (clpC) [Streptococcus parasuis strain SFJ45]
MKFSTGLQRVFEDAQLIAQRYACDHLETWHILLAFVINHDTVAGAVLAEYPMSISDFEHATFVVTEKVYREELDKFNVLS
SSKRLEDTAQFARKIAEVVKAKELGSEHLFQAMLLDKRSTASQILDKVGFHFEEIEDEFRFVDLRKNLEYRAGFTKEDLK
AIRSVMKGGKAKTASVGQMMGMPPTAQSGGLEDYTRDLTALAREGKIEPVIGRDAEISRMIQILSRKTKNNPVLVGDAGV
GKTALALGLAQRVAEGDVPVSLAKMRVLELDLMNVIAGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGID
STLDAANILKPALARGTLRTVGATTQDEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHRVRIGDAAV
ETAVAYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQVEETGLSSIDKALMAGKYKTVSKLLIKTTEKNLLSQNDDLEV
TEDDILETLSRLSGIPVAKLSQSDTKKYLNLEAELHKRVIGQEEAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVGK
TELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLL
QVLDDGVLTDSKGRKVDFSNTVIIMTSNLGATALRDDKTVGFGAADLSKDHKEVEKRIFEELKKTYRPEFINRIDEKVVF
HSLTESDMLDVVKVMVKPLIVVAASKGILLKFQPSALKLLAKEGYDPEMGARPLRRLLQTKLEDPMAEMLLREDLGAGMV
LKVGVKANQLKFESVNE

Nucleotide

• Length: 2454 bp

>NTDB_id=718680 NWE22_RS01040 WP_239604461.1 190619..193072(+) (clpC) [Streptococcus parasuis strain SFJ45]
ATGAAATTTTCAACAGGCTTACAACGGGTTTTTGAAGATGCTCAGTTGATTGCCCAACGATATGCATGCGATCATTTAGA
AACGTGGCATATTTTGCTAGCATTTGTCATCAATCACGATACGGTAGCTGGTGCTGTTTTGGCAGAATACCCAATGAGTA
TTTCAGATTTCGAACATGCTACTTTTGTTGTTACAGAAAAAGTATACCGTGAAGAATTGGATAAATTTAATGTTCTATCC
TCCTCAAAAAGATTAGAGGATACAGCTCAGTTCGCTAGAAAGATTGCAGAAGTCGTTAAGGCAAAAGAATTAGGAAGCGA
GCATTTGTTTCAGGCAATGCTGTTAGACAAACGTTCAACCGCAAGTCAAATTCTAGATAAAGTAGGTTTTCATTTTGAAG
AGATAGAAGATGAATTCCGTTTTGTTGATTTGCGTAAAAACTTAGAGTATCGTGCAGGGTTCACCAAAGAGGATTTGAAA
GCTATCCGTAGCGTGATGAAAGGTGGAAAGGCTAAAACAGCAAGTGTAGGTCAAATGATGGGCATGCCACCAACTGCTCA
AAGTGGTGGATTGGAGGATTATACACGAGATCTGACAGCCTTAGCCCGCGAGGGTAAAATTGAACCTGTTATTGGTCGCG
ATGCTGAAATTTCACGGATGATTCAAATTCTATCACGTAAAACGAAGAACAATCCTGTTTTGGTTGGCGATGCAGGTGTT
GGGAAAACAGCACTAGCATTAGGTCTTGCCCAGCGTGTTGCAGAAGGAGATGTTCCTGTCAGTTTAGCAAAGATGCGTGT
TTTGGAACTTGATTTAATGAATGTTATTGCAGGAACTCGTTTCCGTGGTGACTTTGAAGAGCGGATGAATAATATCATCA
ATGATATTGAAGAAGATGGTCAGGTTATCCTCTTTATCGATGAATTACATACTATTATGGGGTCGGGTTCGGGAATTGAT
TCAACCTTAGATGCTGCCAATATTCTCAAACCGGCCTTGGCTCGAGGGACCCTACGCACTGTTGGTGCAACGACACAGGA
TGAATACCAAAAGCATATTGAAAAAGATGCTGCCCTGGTCCGTCGTTTTGCCAAAGTGACCATTGAAGAGCCGACAGTTG
AGGACAGTATTGCCATTTTGACCGGGCTTAAAGGGACTTTTGAAAAATACCATAGGGTCCGTATTGGAGATGCGGCTGTT
GAGACAGCTGTGGCTTACGCCAAGAGGTATCTGACTAGTAAAAACTTGCCAGACTCAGCAATTGACTTGTTAGATGAAGC
CAGTGCAACTGTACAAAATAGAGTGAAAGGGCAGGTTGAAGAAACAGGTCTTTCGAGTATTGATAAAGCTTTGATGGCTG
GAAAATACAAGACTGTCAGTAAGCTCTTAATCAAGACTACAGAAAAGAATCTGTTGAGTCAAAACGATGACTTAGAAGTG
ACAGAAGATGACATTTTGGAAACACTTAGTCGCTTATCAGGTATCCCAGTAGCCAAGCTCAGCCAATCAGATACTAAGAA
GTACCTGAATCTGGAAGCAGAATTGCACAAACGTGTGATTGGGCAGGAAGAAGCTATTTCTGCCGTTAGTAGAGCTATCC
GCCGTAATCAGTCGGGGATTCGGACAGGTCGCAGACCGATTGGTTCCTTTATGTTCTTAGGACCAACTGGTGTCGGTAAG
ACTGAGCTTGCTAAAGCCTTGGCAGAGGTTCTCTTTGATGATGAATCTGCTCTTATCCGTTTTGATATGTCTGAGTATAT
GGAGAAATTTGCGGCCAGCCGTCTCAATGGAGCGCCTCCAGGCTATGTTGGCTATGAAGAAGGTGGCGAATTAACAGAAA
AAGTTCGTAATAAACCTTATTCTGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCATCCAGATATTTTCAATGTTCTCTTG
CAGGTCTTGGATGACGGTGTCTTGACCGATAGTAAGGGTCGCAAGGTTGATTTCTCCAATACAGTCATTATCATGACATC
AAACTTGGGAGCAACAGCTCTTCGCGATGACAAGACTGTTGGGTTTGGTGCGGCTGATCTGTCCAAAGACCACAAGGAAG
TGGAGAAACGCATTTTTGAAGAATTGAAAAAGACCTATCGTCCTGAATTTATCAACCGTATCGATGAAAAGGTAGTCTTC
CACAGCTTGACAGAATCCGATATGTTGGATGTTGTCAAAGTGATGGTGAAGCCATTGATTGTGGTTGCCGCGAGCAAGGG
AATCCTCCTGAAATTCCAACCATCAGCCCTCAAATTGTTGGCCAAAGAAGGCTACGATCCAGAAATGGGTGCTCGCCCTC
TTCGTCGGTTGCTCCAAACAAAATTGGAAGACCCGATGGCAGAAATGCTTTTGCGTGAAGATCTTGGAGCAGGTATGGTT
CTGAAAGTGGGTGTCAAAGCTAACCAACTCAAATTTGAGAGTGTGAATGAATAG

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (372-449)

• AAA domain (Cdc48 subfamily) (AAA_2) (545-716)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (102-137)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-49)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (723-798)

• ATPase family associated with various cellular activities (AAA) (AAA) (233-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae Rx1	71.13	99.633	0.709
clpC	Streptococcus pneumoniae D39	71.13	99.633	0.709
clpC	Streptococcus pneumoniae TIGR4	71.007	99.633	0.707
clpC	Streptococcus mutans UA159	65.767	99.755	0.656
clpC	Streptococcus thermophilus LMG 18311	65.239	100	0.652
clpC	Streptococcus thermophilus LMD-9	65.239	100	0.652
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.619	100	0.496
clpC	Bacillus subtilis subsp. subtilis str. 168	43.149	100	0.439