Detailed information NTG0718680

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PTA69_RS05345
• Genome accession: NZ_CP117717
• Coordinates: 1107859..1108851 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain B1S11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1102859..1113851

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PTA69_RS05315 (PTA69_05315)	ispD	1102920..1103630 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PTA69_RS05320 (PTA69_05320)	ispF	1103630..1104109 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PTA69_RS05325 (PTA69_05325)	truD	1104106..1105155 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
PTA69_RS05330 (PTA69_05330)	surE	1105136..1105897 (+)	762	WP_057697505.1	5'/3'-nucleotidase SurE	-
PTA69_RS05335 (PTA69_05335)	pcm	1105891..1106517 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PTA69_RS05340 (PTA69_05340)	nlpD	1106702..1107796 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PTA69_RS05345 (PTA69_05345)	rpoS	1107859..1108851 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PTA69_RS05350 (PTA69_05350)	-	1108972..1109379 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
PTA69_RS05355 (PTA69_05355)	-	1109526..1110119 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
PTA69_RS05360 (PTA69_05360)	-	1110119..1111546 (+)	1428	WP_021578698.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
PTA69_RS05365 (PTA69_05365)	-	1111557..1111793 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
PTA69_RS05370 (PTA69_05370)	ygbN	1111832..1113196 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=718680 PTA69_RS05345 WP_000081550.1 1107859..1108851(+) (rpoS) [Escherichia coli strain B1S11]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=718680 PTA69_RS05345 WP_000081550.1 1107859..1108851(+) (rpoS) [Escherichia coli strain B1S11]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715