Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PTA50_RS14340 Genome accession   NZ_CP117714
Coordinates   2948499..2949128 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain PBS4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2943499..2954128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTA50_RS14325 (PTA50_14325) helD 2943741..2945795 (-) 2055 WP_000420533.1 DNA helicase IV -
  PTA50_RS14330 (PTA50_14330) yccF 2945918..2946364 (+) 447 WP_001261231.1 YccF domain-containing protein -
  PTA50_RS14335 (PTA50_14335) yccS 2946374..2948536 (+) 2163 WP_000875023.1 YccS family putative transporter -
  PTA50_RS14340 (PTA50_14340) sxy/tfoX 2948499..2949128 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PTA50_RS14345 (PTA50_14345) sulA 2949347..2949856 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PTA50_RS14350 (PTA50_14350) ompA 2950213..2951265 (+) 1053 WP_000750419.1 porin OmpA -
  PTA50_RS14355 (PTA50_14355) matP 2951341..2951793 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  PTA50_RS14360 (PTA50_14360) ycbZ 2951979..2953739 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=718623 PTA50_RS14340 WP_000839153.1 2948499..2949128(-) (sxy/tfoX) [Escherichia coli strain PBS4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=718623 PTA50_RS14340 WP_000839153.1 2948499..2949128(-) (sxy/tfoX) [Escherichia coli strain PBS4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1