Detailed information NTG0718599

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PTA50_RS05325
• Genome accession: NZ_CP117714
• Coordinates: 1095921..1096913 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PBS4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1090921..1101913

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PTA50_RS05295 (PTA50_05295)	ispD	1090982..1091692 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PTA50_RS05300 (PTA50_05300)	ispF	1091692..1092171 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PTA50_RS05305 (PTA50_05305)	truD	1092168..1093217 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
PTA50_RS05310 (PTA50_05310)	surE	1093198..1093959 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
PTA50_RS05315 (PTA50_05315)	pcm	1093953..1094579 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PTA50_RS05320 (PTA50_05320)	nlpD	1094764..1095858 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
PTA50_RS05325 (PTA50_05325)	rpoS	1095921..1096913 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PTA50_RS05330 (PTA50_05330)	-	1097034..1097441 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
PTA50_RS05335 (PTA50_05335)	-	1097588..1098181 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
PTA50_RS05340 (PTA50_05340)	-	1098181..1099608 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
PTA50_RS05345 (PTA50_05345)	-	1099619..1099855 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
PTA50_RS05350 (PTA50_05350)	ygbN	1099894..1101258 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=718599 PTA50_RS05325 WP_000081550.1 1095921..1096913(+) (rpoS) [Escherichia coli strain PBS4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=718599 PTA50_RS05325 WP_000081550.1 1095921..1096913(+) (rpoS) [Escherichia coli strain PBS4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715