Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SA231_RS11745 Genome accession   NZ_AP024203
Coordinates   2376253..2377932 (-) Length   559 a.a.
NCBI ID   WP_117219989.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA23-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2371253..2382932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA231_RS11725 (SA231_22730) - 2371403..2372677 (-) 1275 WP_000406833.1 dihydrolipoamide acetyltransferase family protein -
  SA231_RS11730 (SA231_22740) - 2372690..2373673 (-) 984 WP_001096632.1 alpha-ketoacid dehydrogenase subunit beta -
  SA231_RS11735 (SA231_22750) - 2373673..2374665 (-) 993 WP_000568356.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  SA231_RS11740 (SA231_22760) lpdA 2374681..2376102 (-) 1422 WP_001291530.1 dihydrolipoyl dehydrogenase -
  SA231_RS11745 (SA231_22770) recN 2376253..2377932 (-) 1680 WP_117219989.1 DNA repair protein RecN Machinery gene
  SA231_RS11750 (SA231_22780) argR 2377948..2378400 (-) 453 WP_001124985.1 transcriptional regulator ArgR -
  SA231_RS11755 (SA231_22790) - 2378831..2379712 (-) 882 WP_000183379.1 polyprenyl synthetase family protein -
  SA231_RS11760 (SA231_22800) - 2379690..2379920 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  SA231_RS11765 (SA231_22810) xseA 2379913..2381250 (-) 1338 WP_001286934.1 exodeoxyribonuclease VII large subunit -
  SA231_RS11770 (SA231_22820) nusB 2381267..2381656 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  SA231_RS11775 (SA231_22830) - 2381716..2382078 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64300.93 Da        Isoelectric Point: 4.7640

>NTDB_id=71859 SA231_RS11745 WP_117219989.1 2376253..2377932(-) (recN) [Staphylococcus aureus strain SA23-1]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKKELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIERLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDYHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRHR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=71859 SA231_RS11745 WP_117219989.1 2376253..2377932(-) (recN) [Staphylococcus aureus strain SA23-1]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTTAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGAAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCGACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAACTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCTAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATTGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGAGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGCATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGTGACTATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACATAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44

Multiple sequence alignment